Skip to content

Releases: CSCfi/hpc-container-wrapper

v0.4.0

25 Nov 13:59
f09158f
Compare
Choose a tag to compare

What's Changed

  • Replace miniconda by miniforge
  • Tykky shell convenience function to activate and deactivate environments

v0.3.3

19 Sep 09:57
Compare
Choose a tag to compare

What's Changed

  • Automatically create output directory if it doesn't exist
  • Increase context length of prints from 10 to 20

v0.3.2: Merge pull request #20 from CSCfi/no_hardcoded

05 Aug 12:07
62f4675
Compare
Choose a tag to compare
Don't hardcode path to singularity

Tykky v0.3.0

20 Jan 13:40
adcb22c
Compare
Choose a tag to compare

Changelog

  • When creating a venv from a conda installation, conda is no longer activated unless forced with CW_FORCE_CONDA_ACTIVATE
  • System site packages can now be enabled when using pip-containerize with the flag --system-site-packages
  • Version information is now saved in share/VERSION.yml when doing an installation
  • wrap-install no longer excludes the parent mount point when using apptainer.
  • wrap-container will switch to using sh if bash is not found when generating the wrappers
  • Nested invocations now work even if the switch between _bin and bin fails
  • In place upgrades now possible even if installation is in use, but will print a warning.
  • Enabling user ~/.condarc with CW_ENABLE_CONDARC has been documented.

Non isolated installation are now composable by adding their correct image mount path to CW_EXTRA_BIND_MOUNTS.
This enables calling software from Tykky installation A even if installation B was the one to start the container.

Enables e.g users to use Tykky to install snakemake using conda and then call other Tykky installed software in their workflow transparently.
New feature so Mileage may vary