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Update dependencies #3306

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merged 2 commits into from
Sep 18, 2024
Merged

Update dependencies #3306

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25e2878
Update dependencies
charleskawczynski Sep 16, 2024
26ebfff
Increase allocation limit
charleskawczynski Sep 18, 2024
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53 changes: 33 additions & 20 deletions docs/Manifest.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -36,24 +36,28 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.5"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"]
git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a"
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.37"
version = "0.1.38"

[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
AccessorsDatesExt = "Dates"
AccessorsIntervalSetsExt = "IntervalSets"
AccessorsStaticArraysExt = "StaticArrays"
AccessorsStructArraysExt = "StructArrays"
AccessorsTestExt = "Test"
AccessorsUnitfulExt = "Unitful"

[deps.Accessors.weakdeps]
AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"

[[deps.Adapt]]
Expand All @@ -67,9 +71,9 @@ weakdeps = ["StaticArrays"]
AdaptStaticArraysExt = "StaticArrays"

[[deps.AdaptivePredicates]]
git-tree-sha1 = "7d5da5dd472490d048b081ca1bda4a7821b06456"
git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6"
uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7"
version = "1.1.1"
version = "1.2.0"

[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
Expand Down Expand Up @@ -174,9 +178,9 @@ version = "0.4.7"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "dce2e49fc53490efb39161267d74f27be0ae2cee"
git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.4"
version = "1.7.5"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
Expand Down Expand Up @@ -270,9 +274,9 @@ version = "1.1.0"

[[deps.CairoMakie]]
deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
git-tree-sha1 = "3443ecd9d38c1aeb2c6d0fa3a01598a59929da1d"
git-tree-sha1 = "4f827b38d3d9ffe6e3b01fbcf866c625fa259ca5"
uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
version = "0.12.10"
version = "0.12.11"

[[deps.Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
Expand All @@ -291,7 +295,7 @@ weakdeps = ["SparseArrays"]
ChainRulesCoreSparseArraysExt = "SparseArrays"

[[deps.ClimaAtmos]]
deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "YAML"]
deps = ["Adapt", "ArgParse", "ArtifactWrappers", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "RRTMGP", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
path = ".."
uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
version = "0.27.5"
Expand All @@ -311,9 +315,9 @@ version = "0.6.4"

[[deps.ClimaCore]]
deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"]
git-tree-sha1 = "ffd27299555f968f96e348060146228c6259bb4b"
git-tree-sha1 = "806e8490ff1aa664ca579544d798f8addfa1b07d"
uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
version = "0.14.14"
version = "0.14.15"

[deps.ClimaCore.extensions]
ClimaCoreCUDAExt = "CUDA"
Expand All @@ -337,9 +341,9 @@ version = "0.10.14"

[[deps.ClimaTimeSteppers]]
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "678b7f1dbaec5a7b486c29b5b98eeba1f916b9a8"
git-tree-sha1 = "396fb5706c55b40bf7ca30498c1ea2a045827f9a"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.36"
version = "0.7.37"

[deps.ClimaTimeSteppers.extensions]
ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"]
Expand Down Expand Up @@ -545,9 +549,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DelaunayTriangulation]]
deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
git-tree-sha1 = "9903123ab7fc5e55053292aff04ff5d7aff92633"
git-tree-sha1 = "94eb20e6621600f4315813b1d1fc9b8a5a6a34db"
uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
version = "1.3.0"
version = "1.4.0"

[[deps.DelimitedFiles]]
deps = ["Mmap"]
Expand Down Expand Up @@ -1414,15 +1418,15 @@ version = "0.5.13"

[[deps.Makie]]
deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
git-tree-sha1 = "768151abed75c6cf5be774456ae82bf9bb7274e9"
git-tree-sha1 = "2281aaf0685e5e8a559982d32f17d617a949b9cd"
uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
version = "0.21.10"
version = "0.21.11"

[[deps.MakieCore]]
deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
git-tree-sha1 = "4b7aa3b9c51d1d9db74e2401dd1d1eaec416ee55"
git-tree-sha1 = "22fed09860ca73537a36d4e5a9bce0d9e80ee8a8"
uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
version = "0.8.7"
version = "0.8.8"

[[deps.ManualMemory]]
git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
Expand Down Expand Up @@ -2305,6 +2309,15 @@ git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b"
uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8"
version = "0.1.5"

[[deps.UnrolledUtilities]]
git-tree-sha1 = "1244bd810bfd53c539ef5463b01dd9b808c2e5da"
uuid = "0fe1646c-419e-43be-ac14-22321958931b"
version = "0.1.5"
weakdeps = ["StaticArrays"]

[deps.UnrolledUtilities.extensions]
UnrolledUtilitiesStaticArraysExt = "StaticArrays"

[[deps.UnsafeAtomics]]
git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278"
uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f"
Expand Down
30 changes: 17 additions & 13 deletions examples/Manifest.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -31,24 +31,28 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.5"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"]
git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a"
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.37"
version = "0.1.38"

[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
AccessorsDatesExt = "Dates"
AccessorsIntervalSetsExt = "IntervalSets"
AccessorsStaticArraysExt = "StaticArrays"
AccessorsStructArraysExt = "StructArrays"
AccessorsTestExt = "Test"
AccessorsUnitfulExt = "Unitful"

[deps.Accessors.weakdeps]
AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"

[[deps.Adapt]]
Expand All @@ -62,9 +66,9 @@ weakdeps = ["StaticArrays"]
AdaptStaticArraysExt = "StaticArrays"

[[deps.AdaptivePredicates]]
git-tree-sha1 = "7d5da5dd472490d048b081ca1bda4a7821b06456"
git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6"
uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7"
version = "1.1.1"
version = "1.2.0"

[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
Expand Down Expand Up @@ -175,9 +179,9 @@ version = "0.5.0"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "dce2e49fc53490efb39161267d74f27be0ae2cee"
git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.4"
version = "1.7.5"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
Expand Down Expand Up @@ -385,9 +389,9 @@ version = "0.10.14"

[[deps.ClimaTimeSteppers]]
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "678b7f1dbaec5a7b486c29b5b98eeba1f916b9a8"
git-tree-sha1 = "396fb5706c55b40bf7ca30498c1ea2a045827f9a"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.36"
version = "0.7.37"

[deps.ClimaTimeSteppers.extensions]
ClimaTimeSteppersBenchmarkToolsExt = ["CUDA", "BenchmarkTools", "OrderedCollections", "StatsBase", "PrettyTables"]
Expand Down Expand Up @@ -592,9 +596,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DelaunayTriangulation]]
deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
git-tree-sha1 = "9903123ab7fc5e55053292aff04ff5d7aff92633"
git-tree-sha1 = "94eb20e6621600f4315813b1d1fc9b8a5a6a34db"
uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
version = "1.3.0"
version = "1.4.0"

[[deps.DelimitedFiles]]
deps = ["Mmap"]
Expand Down Expand Up @@ -2435,9 +2439,9 @@ uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8"
version = "0.1.5"

[[deps.UnrolledUtilities]]
git-tree-sha1 = "d0b2aa2d71fa2f4494cb3cf69719a6807ea0df40"
git-tree-sha1 = "1244bd810bfd53c539ef5463b01dd9b808c2e5da"
uuid = "0fe1646c-419e-43be-ac14-22321958931b"
version = "0.1.4"
version = "0.1.5"
weakdeps = ["StaticArrays"]

[deps.UnrolledUtilities.extensions]
Expand Down
30 changes: 17 additions & 13 deletions perf/Manifest.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -31,24 +31,28 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.5"

[[deps.Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"]
git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a"
deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"]
git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.37"
version = "0.1.38"

[deps.Accessors.extensions]
AccessorsAxisKeysExt = "AxisKeys"
AccessorsDatesExt = "Dates"
AccessorsIntervalSetsExt = "IntervalSets"
AccessorsStaticArraysExt = "StaticArrays"
AccessorsStructArraysExt = "StructArrays"
AccessorsTestExt = "Test"
AccessorsUnitfulExt = "Unitful"

[deps.Accessors.weakdeps]
AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"

[[deps.Adapt]]
Expand All @@ -62,9 +66,9 @@ weakdeps = ["StaticArrays"]
AdaptStaticArraysExt = "StaticArrays"

[[deps.AdaptivePredicates]]
git-tree-sha1 = "7d5da5dd472490d048b081ca1bda4a7821b06456"
git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6"
uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7"
version = "1.1.1"
version = "1.2.0"

[[deps.AliasTables]]
deps = ["PtrArrays", "Random"]
Expand Down Expand Up @@ -175,9 +179,9 @@ version = "0.5.0"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "dce2e49fc53490efb39161267d74f27be0ae2cee"
git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.7.4"
version = "1.7.5"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
Expand Down Expand Up @@ -396,9 +400,9 @@ version = "0.10.14"

[[deps.ClimaTimeSteppers]]
deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
git-tree-sha1 = "678b7f1dbaec5a7b486c29b5b98eeba1f916b9a8"
git-tree-sha1 = "396fb5706c55b40bf7ca30498c1ea2a045827f9a"
uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
version = "0.7.36"
version = "0.7.37"
weakdeps = ["BenchmarkTools", "CUDA", "OrderedCollections", "PrettyTables", "StatsBase"]

[deps.ClimaTimeSteppers.extensions]
Expand Down Expand Up @@ -602,9 +606,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DelaunayTriangulation]]
deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"]
git-tree-sha1 = "9903123ab7fc5e55053292aff04ff5d7aff92633"
git-tree-sha1 = "94eb20e6621600f4315813b1d1fc9b8a5a6a34db"
uuid = "927a84f5-c5f4-47a5-9785-b46e178433df"
version = "1.3.0"
version = "1.4.0"

[[deps.DelimitedFiles]]
deps = ["Mmap"]
Expand Down Expand Up @@ -2564,9 +2568,9 @@ uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8"
version = "0.1.5"

[[deps.UnrolledUtilities]]
git-tree-sha1 = "d0b2aa2d71fa2f4494cb3cf69719a6807ea0df40"
git-tree-sha1 = "1244bd810bfd53c539ef5463b01dd9b808c2e5da"
uuid = "0fe1646c-419e-43be-ac14-22321958931b"
version = "0.1.4"
version = "0.1.5"
weakdeps = ["StaticArrays"]

[deps.UnrolledUtilities.extensions]
Expand Down
2 changes: 1 addition & 1 deletion perf/flame.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ allocs_limit["flame_perf_target_threaded"] = 2_306_856
allocs_limit["flame_perf_target_callbacks"] = 1_879_184
allocs_limit["flame_perf_gw"] = 882_938_744
allocs_limit["flame_perf_target_prognostic_edmfx_aquaplanet"] = 2_490_248
allocs_limit["flame_gpu_implicit_barowave_moist"] = 336_378
allocs_limit["flame_gpu_implicit_barowave_moist"] = 2_099_536
# Ideally, we would like to track all the allocations, but this becomes too
# expensive there is too many of them. Here, we set the default sample rate to
# 1, but lower it to a smaller value when we expect the job to produce lots of
Expand Down
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