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fix: Increase vardict tumor only cores allocation to 18 #6924

fix: Increase vardict tumor only cores allocation to 18

fix: Increase vardict tumor only cores allocation to 18 #6924

name: pytests
on:
pull_request:
paths-ignore:
- "CHANGELOG.rst"
- "docs/**"
push:
branches:
- master
paths-ignore:
- "CHANGELOG.rst"
- "docs/**"
jobs:
pytest_coveralls:
name: run PyTest
runs-on: ubuntu-22.04
steps:
# Checkout BALSAMIC
- name: Git checkout
id: git_checkout
uses: actions/checkout@v3
# Conda env create
- name: setup conda
id: setup_conda
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: balsamic
environment-file: BALSAMIC/conda/balsamic.yaml
- name: Install the HTML to PDF renderer
run: sudo apt-get update && sudo apt-get install -y wkhtmltopdf
# Install BALSAMIC
- name: Install BALSAMIC
id: install_balsamic
shell: bash -l {0}
run: |
conda activate balsamic
pip install --no-cache-dir .
# Install pytest coveralls dependencies
- name: Install PyTest and Coveralls
id: install_pytest
shell: bash -l {0}
run: |
conda activate balsamic
pip install --no-cache-dir -r requirements-dev.txt
# Run PyTest
- name: Run PyTest
id: pytest
shell: bash -l {0}
run: |
conda activate balsamic
py.test --cov-report=xml --cov=BALSAMIC -rsxv tests/*
env:
SENTIEON_LICENSE: dummy_license
SENTIEON_INSTALL_DIR: dummy_install_dir
# Run Codecov
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
flags: unittests
fail_ci_if_error: true
verbose: true