perf: Update python version and its dependencies #5304
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: pytests | |
on: | |
push: | |
paths-ignore: | |
- "CHANGELOG.rst" | |
- "docs/**" | |
pull_request: | |
paths-ignore: | |
- "CHANGELOG.rst" | |
- "docs/**" | |
jobs: | |
pytest_coveralls: | |
name: run PyTest | |
runs-on: ubuntu-20.04 | |
steps: | |
# Checkout BALSAMIC | |
- name: Git checkout | |
id: git_checkout | |
uses: actions/checkout@v3 | |
# Get branch name | |
- name: Get branch name | |
id: get_branch_name | |
shell: bash | |
run: echo "##[set-output name=branch;]$(echo ${GITHUB_REF##*/})" | |
# Conda env create | |
- name: setup conda | |
id: setup_conda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: balsamic | |
environment-file: BALSAMIC/conda/balsamic.yaml | |
# Install BALSAMIC | |
- name: Install BALSAMIC | |
id: install_balsamic | |
shell: bash -l {0} | |
run: | | |
conda activate balsamic | |
pip install --no-cache-dir . | |
# Install pytest coveralls dependencies | |
- name: Install PyTest and Coveralls | |
id: install_pytest | |
shell: bash -l {0} | |
run: | | |
conda activate balsamic | |
pip install --no-cache-dir -r requirements-dev.txt | |
# Run PyTest | |
- name: Run PyTest | |
id: pytest | |
shell: bash -l {0} | |
run: | | |
conda activate balsamic | |
py.test --cov-report=xml --cov=BALSAMIC -rsxv tests/* | |
env: | |
SENTIEON_LICENSE: dummy_license | |
SENTIEON_INSTALL_DIR: dummy_install_dir | |
# Run Codecov | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: ./coverage.xml | |
flags: unittests | |
fail_ci_if_error: true | |
verbose: true |