Merge branch 'fix-rm-temp' into refactor-bind-path-singularity

Clinical-Genomics · Aug 7, 2023 · 1eb45d3 · 1eb45d3
2 parents 788a39c + a7dbda0
commit 1eb45d3
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diff --git a/BALSAMIC/snakemake_rules/annotation/vep.rule b/BALSAMIC/snakemake_rules/annotation/vep.rule
@@ -223,7 +223,6 @@ fi
 tabix -p vcf -f {output.vcf_sv_clinical};
 
 rm {input.vcf_sv_clinical_obs};
-rm {params.vcf_somatic_obs};
         """
 
 

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -28,6 +28,7 @@ Fixed:
 * Link external fastqs to case folder & create case directory https://github.com/Clinical-Genomics/BALSAMIC/pull/1195
 * vcf2cytosure container missing constants https://github.com/Clinical-Genomics/BALSAMIC/pull/1198
 * Bash commands in vep_somatic_clinical_snv https://github.com/Clinical-Genomics/BALSAMIC/pull/1200
+* Fix SVDB annotation intermediate rule https://github.com/Clinical-Genomics/BALSAMIC/pull/1218
 
 Removed:
 ^^^^^^^