fix changelog conflict

Clinical-Genomics · Oct 11, 2024 · 6890945 · 6890945
2 parents 66e40d7 + 6d10f6c
commit 6890945
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diff --git a/BALSAMIC/constants/rules.py b/BALSAMIC/constants/rules.py
@@ -229,6 +229,7 @@
     "finalize_gens_outputfiles",
     # TMB
     "tmb_calculation",
+    "msisensorpro_msi_tumor_normal",
     # CNV report
     "merge_cnv_pdf_reports",
 ]
diff --git a/BALSAMIC/snakemake_rules/annotation/msi_tumor_normal.rule b/BALSAMIC/snakemake_rules/annotation/msi_tumor_normal.rule
@@ -42,6 +42,7 @@ rule msisensorpro_msi_tumor_normal:
   params:
     tmpdir=tempfile.mkdtemp(prefix=tmp_dir),
     case_id=config["analysis"]["case_id"],
+    housekeeper_id={"id": config["analysis"]["case_id"],"tags": "research"},
   message:
     "Analysing MSI using msisensor-pro for {params.case_id}"
   shell:

diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -5,12 +5,14 @@ Added:
 ^^^^^^
 * MSIsensor-pro container https://github.com/Clinical-Genomics/BALSAMIC/pull/1444
 * MSI analysis to the tumor-normal workflow https://github.com/Clinical-Genomics/BALSAMIC/pull/1454
+* MSI tumor-normal analysis to housekeeper storage https://github.com/Clinical-Genomics/BALSAMIC/pull/1483
 * Sentieon install directory path to case config arguments https://github.com/Clinical-Genomics/BALSAMIC/pull/1461
 * UMI extraction and deduplication to TGA workflow https://github.com/Clinical-Genomics/BALSAMIC/pull/1358
 * GENS input files for TGA https://github.com/Clinical-Genomics/BALSAMIC/pull/1448
 * Padding of bed-regions for CNVkit to minimum 100 bases https://github.com/Clinical-Genomics/BALSAMIC/pull/1469
 * Added min mapq 20 to CNVkit PON workflow https://github.com/Clinical-Genomics/BALSAMIC/pull/1465
 * CNVkit PONs for Exome comprehensive 10.2, GMSsolid 15.2, GMCKsolid 4.2 https://github.com/Clinical-Genomics/BALSAMIC/pull/1465
+* Sentieon install directory path to case config arguments https://giithub.com/Clinical-Genomics/BALSAMIC/pull/1461
 
 Changed:
 ^^^^^^^^