Balsamic v16 release #3408
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Balsamic v16 release #3408
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## Changed: - Removed UMI options from Balsamic CLI - Removed UMI attributes from Balsamic QC model
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@khurrammaqbool as the tumor only analysis of MSI will not be added for release 16 I assume that I can remove this #3407 from the to do list above? : ) |
66 tasks
GENS has previously only been activated for WGS in Balsamic, however with the inclusion of this PR into production Clinical-Genomics/BALSAMIC#1448 CNV and BAF profiles from TGA samples can be uploaded as well. This feature is planned for release 16.0.0 of Balsamic (somewhere around **August maybe**) and requires a couple of small changes in CG. ### Added - gnomad-af argument to TGA samples ### Changed - gens upload no longer filters out TGA samples
…into balsamic_v16
### Added - new argument for balsamic with new loqusdb vcf for artefact filtering
53 tasks
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Code has been tested in individual PRs merged into this. But all aspects will be tested again during the verification tests before starting validation of balsamic. PR will not be merged until all tests there have been successful! |
ChrOertlin
approved these changes
Oct 16, 2024
Co-authored-by: ChristianOertlin <[email protected]>
15 tasks
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Description
NOTE: Do not merge until balsamic release 16.0.0 has been deployed
PR containing all the necessary changes for the Balsamic v16 release.
Changes needed for release 16:
--msi-ponoption to cg workflow balsamic #3407 (NOT NECESSARY AS THIS WILL NOT BE ADDED TO RELEASE 16)Optional changes for release 16:
Added:
Changed
Fixed
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