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Generalize and rename buffer aliquotation script used in the Sample Placement step in several LIMS workflows #807

Generalize and rename buffer aliquotation script used in the Sample Placement step in several LIMS workflows

Generalize and rename buffer aliquotation script used in the Sample Placement step in several LIMS workflows #807

Workflow file for this run

name: Tests CI
on: ["pull_request"]
jobs:
tests-coverage:
runs-on: ubuntu-latest
steps:
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Check out limsmock
uses: actions/checkout@v2
with:
repository: "Clinical-Genomics/limsmock"
- name: Install limsmock dependencies
run: |
python -m pip install --upgrade pip==21.1.2
pip install -r requirements.txt -r requirements-dev.txt .
- name: Check out cg_lims
uses: actions/checkout@v2
with:
repository: "Clinical-Genomics/cg_lims"
- name: Install cg_lims dependencies
run: |
pip install -r requirements.txt -r requirements-dev.txt .
- name: Install coveralls dependencies
run: |
pip install pytest-cov coveralls
- name: Test with pytest & Coveralls
run: |
pytest --cov=cg_lims/
coveralls
env:
GITHUB: 1
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}