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ONT workflow EPPs

ONT workflow EPPs #741

Workflow file for this run

name: Tests CI
on: ["pull_request"]
jobs:
tests-coverage:
runs-on: ubuntu-latest
steps:
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.8
- name: Check out limsmock
uses: actions/checkout@v2
with:
repository: "Clinical-Genomics/limsmock"
- name: Install limsmock dependencies
run: |
python -m pip install --upgrade pip==21.1.2
pip install -r requirements.txt -r requirements-dev.txt .
- name: Check out cg_lims
uses: actions/checkout@v2
with:
repository: "Clinical-Genomics/cg_lims"
- name: Install cg_lims dependencies
run: |
pip install -r requirements.txt -r requirements-dev.txt .
- name: Install coveralls dependencies
run: |
pip install pytest-cov coveralls
- name: Test with pytest & Coveralls
run: |
pytest --cov=cg_lims/
coveralls
env:
GITHUB: 1
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}