Update cg_lims/EPPs/files/file_to_udf.py

Co-authored-by: Karl Svärd <[email protected]>
Clinical-Genomics · Feb 21, 2024 · be83d4d · be83d4d
1 parent c65210d
commit be83d4d
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/cg_lims/EPPs/files/file_to_udf.py b/cg_lims/EPPs/files/file_to_udf.py
@@ -47,6 +47,9 @@ def set_udfs(well_field: str, value_field: str, udf: str, well_dict: dict, resul
             if value is None:
                 error_msg.append("Some samples in the file hade missing values.")
                 continue
+            elif well not in well_dict:
+                LOG.info(f"Well {well} was not found in the step. Skipping!")
+                continue
             art = well_dict[well]
             try:
                 art.udf[udf] = str(value)