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Patch flow cell output replacer #462

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merged 1 commit into from
Dec 18, 2023
Merged

Patch flow cell output replacer #462

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4 changes: 2 additions & 2 deletions cg_lims/EPPs/udf/set/replace_flow_cell_output_path.py
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Original file line number Diff line number Diff line change
Expand Up @@ -20,13 +20,13 @@ def get_output_path(process: Process) -> str:
def convert_output_path(path: str) -> str:
"""Return a corrected output path if needed. Can currently convert paths of the types:
- \\<some novaseq windows network path>\clinicaldata\Runs\<run folder>
- X:\<run folder>\
- <windows hard drive>:\<run folder>\
- //cg-nas.scilifelab.se/cg_data/seqdata/20230824_LH00217_0004_A225CW7LT3

They are replaced with: \\130.237.80.51\Runs\<run folder>
"""
new_path = path
if "X:\\" in path:
if ":\\" in path:
new_path = "\\\\130.237.80.51\\Runs" + path.split(":")[1]
elif "\\clinicaldata\\Runs\\" in path:
new_path = "\\\\130.237.80.51\\Runs" + path.split("Runs")[1]
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