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Skip RC QC EPP updates #470

Merged
merged 3 commits into from
Jan 19, 2024
Merged

Skip RC QC EPP updates #470

merged 3 commits into from
Jan 19, 2024

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Karl-Svard
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@Karl-Svard Karl-Svard commented Jan 18, 2024

Added

  • new option to skip error messages to the copy EPP sample_to_artifact.py
  • new measurement and input artifact flags for the EPP calculate_amount_ng.py

Steps to consider while deploying

  • Configuration changes:
  • Documentation updates:
  • Inform users by email:

Review:

  • Code approved by
  • Tests executed on stage by: (Document the test done with screen shots and description.)
  • "Merge and deploy" approved by

This version is a:

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

@Karl-Svard Karl-Svard changed the title Add option to ignore fails in the copy EPP sample_to_artifact Skip RC QC EPP updates Jan 19, 2024
@Karl-Svard Karl-Svard merged commit eb361bd into master Jan 19, 2024
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@Karl-Svard Karl-Svard deleted the skip_rc branch January 19, 2024 10:54
@Karl-Svard
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Deployed to production

[karl.svard@clinical-lims ~]$ sudo -iu glsai
[sudo] password for karl.svard: 
-bash-4.2$ conda activate cg_lims
(cg_lims) -bash-4.2$ pip install -U "git+https://github.com/Clinical-Genomics/cg_lims@master"
Collecting git+https://github.com/Clinical-Genomics/cg_lims@master
  Cloning https://github.com/Clinical-Genomics/cg_lims (to revision master) to /tmp/pip-req-build-wg7awqhl
  Running command git clone -q https://github.com/Clinical-Genomics/cg_lims /tmp/pip-req-build-wg7awqhl
  Resolved https://github.com/Clinical-Genomics/cg_lims to commit 842147aec9f69c5dd0ee5c4d7f7424f3554fd2fb
Building wheels for collected packages: cg-lims
  Building wheel for cg-lims (setup.py) ... done
  Created wheel for cg-lims: filename=cg_lims-6.17.0-py3-none-any.whl size=212535 sha256=f3b6abe2f9e43d59c819f03c4ffb223229b89fc5036ac59d74ebfa3c4f1f2ad1
  Stored in directory: /tmp/pip-ephem-wheel-cache-4e6ghxzc/wheels/c5/64/ee/91a38557457cf80c2e79f05e70c7816fd72a1704981c623ff2
Successfully built cg-lims
Installing collected packages: cg-lims
  Attempting uninstall: cg-lims
    Found existing installation: cg-lims 6.16.3
    Uninstalling cg-lims-6.16.3:
      Successfully uninstalled cg-lims-6.16.3
Successfully installed cg-lims-6.17.0
(cg_lims) -bash-4.2$ 

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2 participants