updated readme

.Rbuildignore

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 ^renv\.lock$
 ^.*\.Rproj$
 ^\.Rproj\.user$
+^README\.Rmd$

README.Rmd

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+---
+output: github_document
+---
+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>",
+  fig.path = "man/figures/README-",
+  out.width = "100%"
+)
+```
+
+# KINNET
+
+<!-- badges: start -->
+<!-- badges: end -->
+
+This package provides the functionality to process PamGene's PamChip
+    Data Output and generate kinase interaction networks from that.
+
+This project uses a bayesian algorithm to generate bayesian networks for
+     defining dependence relationships between peptide sequences in the PamChip data.
+     It then uses a novel kinase assignment method to assign upstream kinases to each 
+     peptide which is then output as a graph.
+
+## Installation
+
+You can install the released version of KINNET from [CRAN](https://CRAN.R-project.org) with:
+
+``` r
+install.packages("KINNET")
+```
+
+You can install the latest development version of KINNET from [Github]() with:
+
+``` r
+remotes::install_github("AliSajid/KINNET")
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+```{r example}
+#library(KINNET)
+## basic example code
+```

README.md

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+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+# KINNET
+
+<!-- badges: start -->
+<!-- badges: end -->
+
+This package provides the functionality to process PamGene’s PamChip
+Data Output and generate kinase interaction networks from that.
+
+This project uses a bayesian algorithm to generate bayesian networks for
+defining dependence relationships between peptide sequences in the
+PamChip data. It then uses a novel kinase assignment method to assign
+upstream kinases to each peptide which is then output as a graph.
+
+## Installation
+
+You can install the released version of KINNET from
+[CRAN](https://CRAN.R-project.org) with:
+
+``` r
+install.packages("KINNET")
+```
+
+You can install the latest development version of KINNET from [Github]()
+with:
+
+``` r
+remotes::install_github("AliSajid/KINNET")
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+``` r
+#library(KINNET)
+## basic example code
+```