Configure Renovate

[renovate]

Welcome to Renovate! This is an onboarding PR to help you understand and configure settings before regular Pull Requests begin.

🚦 To activate Renovate, merge this Pull Request. To disable Renovate, simply close this Pull Request unmerged.

---

Detected Package Files

• .github/workflows/R-CMD-check.yaml (github-actions)
• .github/workflows/pkgdown.yml (github-actions)
• docs/404.html (html)
• docs/LICENSE-text.html (html)
• docs/LICENSE.html (html)
• docs/articles/KRSA.html (html)
• docs/articles/enrichr/enrichr.html (html)
• docs/articles/index.html (html)
• docs/articles/my-vignette.html (html)
• docs/authors.html (html)
• docs/index.html (html)
• docs/reference/KRSA_Mapping_PTK_PamChip_86402_v1.html (html)
• docs/reference/KRSA_Mapping_STK_PamChip_87102_v1.html (html)
• docs/reference/KRSA_coverage_PTK_PamChip_86402_v1.html (html)
• docs/reference/KRSA_coverage_STK_PamChip_87102_v1.html (html)
• docs/reference/KRSA_coverage_STK_PamChip_87102_v2.html (html)
• docs/reference/KRSA_description.html (html)
• docs/reference/ballModel_edges.html (html)
• docs/reference/ballModel_nodes.html (html)
• docs/reference/enrichr_lib_call.html (html)
• docs/reference/index.html (html)
• docs/reference/krsa.html (html)
• docs/reference/krsa_ball_model.html (html)
• docs/reference/krsa_ce_output_kinases.html (html)
• docs/reference/krsa_ce_output_peptides.html (html)
• docs/reference/krsa_coverage_plot.html (html)
• docs/reference/krsa_curve_plot.html (html)
• docs/reference/krsa_cv_plot.html (html)
• docs/reference/krsa_enrichr.html (html)
• docs/reference/krsa_enrichr_plot.html (html)
• docs/reference/krsa_extractEndPoint.html (html)
• docs/reference/krsa_extractEndPointMaxExp.html (html)
• docs/reference/krsa_filter_lowPeps.html (html)
• docs/reference/krsa_filter_nonLinear.html (html)
• docs/reference/krsa_filter_ref_pep.html (html)
• docs/reference/krsa_get_diff.html (html)
• docs/reference/krsa_get_diff_byChip.html (html)
• docs/reference/krsa_group_diff.html (html)
• docs/reference/krsa_heatmap.html (html)
• docs/reference/krsa_heatmap_grouped.html (html)
• docs/reference/krsa_histogram_plot.html (html)
• docs/reference/krsa_qc_steps.html (html)
• docs/reference/krsa_quick_filter.html (html)
• docs/reference/krsa_read.html (html)
• docs/reference/krsa_reverse_krsa_plot.html (html)
• docs/reference/krsa_sampling.html (html)
• docs/reference/krsa_scaleModel.html (html)
• docs/reference/krsa_show_peptides.html (html)
• docs/reference/krsa_top_hits.html (html)
• docs/reference/krsa_violin_plot.html (html)
• docs/reference/krsa_violin_plot_grouped.html (html)
• docs/reference/krsa_waterfall.html (html)
• docs/reference/krsa_zscores_plot.html (html)
• docs/reference/parse_BN_crosstabFile.html (html)
• docs/reference/ptk_pamchip_86402_mapping.html (html)
• docs/reference/reexports.html (html)
• docs/reference/stk_pamchip_87102_mapping.html (html)

Configuration Summary

Based on the default config's presets, Renovate will:

• Start dependency updates only once this onboarding PR is merged
• Show all Merge Confidence badges for pull requests.
• Enable Renovate Dependency Dashboard creation.
• Use semantic commit type fix for dependencies and chore for all others if semantic commits are in use.
• Ignore node_modules, bower_components, vendor and various test/tests directories.
• Group known monorepo packages together.
• Use curated list of recommended non-monorepo package groupings.
• Apply crowd-sourced package replacement rules.
• Apply crowd-sourced workarounds for known problems with packages.

🔡 Do you want to change how Renovate upgrades your dependencies? Add your custom config to renovate.json in this branch. Renovate will update the Pull Request description the next time it runs.

---

What to Expect

With your current configuration, Renovate will create 12 Pull Requests:

Update dependency clipboard.js to v2.0.11

• Schedule: ["at any time"]
• Branch name: renovate/clipboard.js-2.x
• Merge into: main
• Upgrade clipboard.js to sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==

Update dependency mathjax to v2.7.9

• Schedule: ["at any time"]
• Branch name: renovate/mathjax-2.x
• Merge into: main
• Upgrade mathjax to sha512-9BFYrFOc51MxyOy7gCacpfhXjaVLE+fsXrjwWz1sMx8ZK9FuA5vTGuY5vEXNpaVEEIUSiBCCFJOhUiWo2hhF5g==
• Upgrade mathjax to sha512-M36RUChWzAh1veeenRZFql7HydLEnkYmoloiCvVrhz402UZgKI93qkV7SsaxtVKdN95Wzajh39ysrXCq34NTsg==

Update dependency font-awesome to v5.15.4

• Schedule: ["at any time"]
• Branch name: renovate/font-awesome-5.x
• Merge into: main
• Upgrade font-awesome to sha512-fHavkBby/gcFEB2taaBfG0DLdHRGrnvkWQNXVZ5Yb/Fj6LkogecQUd6oyvBVsrWPaHSxs5tNza6LUW/Y6Az9lQ==
• Upgrade font-awesome to sha512-1ycn6IcaQQ40/MKBW2W4Rhis/DbILU74C1vSrLJxCq57o941Ym01SwNsOMqvEBFlcgUa6xLiPY/NS5R+E6ztJQ==

Update dependency headroom to v0.12.0

• Schedule: ["at any time"]
• Branch name: renovate/headroom-0.x
• Merge into: main
• Upgrade headroom to sha512-3zxNImEhQ2pnOSHdyGCCJhpMrU35j7UgnlycU/sLnbsdmcH+pXm9bR9htu6p6ggqx6b5VEKeinajKDpUW7LuTQ==
• Upgrade headroom to sha512-9UsrKTYzS9smDm2E58MLs0ACtOki+UC4bBq4iK5wi7lJycwqcaiHxr1bdEsIVoK0l5STEzLUdYyDdFQ5OEjczw==

Update dependency jquery to v3.7.1

• Schedule: ["at any time"]
• Branch name: renovate/jquery-3.x
• Merge into: main
• Upgrade jquery to sha512-v2CJ7UaYy4JwqLDIrZUI/4hqeoQieOmAZNXBeQyjo21dadnwR+8ZaIJVT8EE2iyI61OV8e6M8PP2/4hpQINQ/g==

Update actions/cache action to v4

• Schedule: ["at any time"]
• Branch name: renovate/actions-cache-4.x
• Merge into: main
• Upgrade actions/cache to v4

Update actions/checkout action to v4

• Schedule: ["at any time"]
• Branch name: renovate/actions-checkout-4.x
• Merge into: main
• Upgrade actions/checkout to v4

Update dependency bootswatch to v5

• Schedule: ["at any time"]
• Branch name: renovate/bootswatch-5.x
• Merge into: main
• Upgrade bootswatch to 5.3.3

Update dependency font-awesome to v6

• Schedule: ["at any time"]
• Branch name: renovate/font-awesome-6.x
• Merge into: main
• Upgrade font-awesome to sha512-veZLkufL0qjcloU3GqyNh2cOqjduXLgni09I72g783Fyudzxcm2A7lxj6Qxn4YrnhJdD8rB9vkR+rOtfF4TZ1g==
• Upgrade font-awesome to sha512-SnH5WK+bZxgPHs44uWIX+LLJAJ9/2PkPKZ5QiAj6Ta86w+fsb2TkcmfRyVX3pBnMFcV7oQPJkl9QevSCWr3W6A==

Update dependency twitter-bootstrap to v5

• Schedule: ["at any time"]
• Branch name: renovate/twitter-bootstrap-5.x
• Merge into: main
• Upgrade twitter-bootstrap to sha512-ykZ1QQr0Jy/4ZkvKuqWn4iF3lqPZyij9iRv6sGqLRdTPkY69YX6+7wvVGmsdBbiIfN/8OdsI7HABjvEok6ZopQ==

Update dependency ubuntu to v22

• Schedule: ["at any time"]
• Branch name: renovate/ubuntu-22.x
• Merge into: main
• Upgrade ubuntu to 22.04

Update r-lib/actions action to v2

• Schedule: ["at any time"]
• Branch name: renovate/r-lib-actions-2.x
• Merge into: main
• Upgrade r-lib/actions to v2

🚸 Branch creation will be limited to maximum 2 per hour, so it doesn't swamp any CI resources or overwhelm the project. See docs for prhourlylimit for details.

---

Warning

Please correct - or verify that you can safely ignore - these dependency lookup failures before you merge this PR.

• Could not determine new digest for update (cdnjs package mathjax/MathJax.js)
• Could not determine new digest for update (cdnjs package mathjax/config/TeX-AMS-MML_HTMLorMML.js)

Files affected: docs/404.html, docs/LICENSE-text.html, docs/LICENSE.html, docs/articles/KRSA.html, docs/articles/enrichr/enrichr.html, docs/articles/index.html, docs/articles/my-vignette.html, docs/authors.html, docs/index.html, docs/reference/KRSA_Mapping_PTK_PamChip_86402_v1.html, docs/reference/KRSA_Mapping_STK_PamChip_87102_v1.html, docs/reference/KRSA_coverage_PTK_PamChip_86402_v1.html, docs/reference/KRSA_coverage_STK_PamChip_87102_v1.html, docs/reference/KRSA_coverage_STK_PamChip_87102_v2.html, docs/reference/KRSA_description.html, docs/reference/ballModel_edges.html, docs/reference/ballModel_nodes.html, docs/reference/enrichr_lib_call.html, docs/reference/index.html, docs/reference/krsa.html, docs/reference/krsa_ball_model.html, docs/reference/krsa_ce_output_kinases.html, docs/reference/krsa_ce_output_peptides.html, docs/reference/krsa_coverage_plot.html, docs/reference/krsa_curve_plot.html, docs/reference/krsa_cv_plot.html, docs/reference/krsa_enrichr.html, docs/reference/krsa_enrichr_plot.html, docs/reference/krsa_extractEndPoint.html, docs/reference/krsa_extractEndPointMaxExp.html, docs/reference/krsa_filter_lowPeps.html, docs/reference/krsa_filter_nonLinear.html, docs/reference/krsa_filter_ref_pep.html, docs/reference/krsa_get_diff.html, docs/reference/krsa_get_diff_byChip.html, docs/reference/krsa_group_diff.html, docs/reference/krsa_heatmap.html, docs/reference/krsa_heatmap_grouped.html, docs/reference/krsa_histogram_plot.html, docs/reference/krsa_qc_steps.html, docs/reference/krsa_quick_filter.html, docs/reference/krsa_read.html, docs/reference/krsa_reverse_krsa_plot.html, docs/reference/krsa_sampling.html, docs/reference/krsa_scaleModel.html, docs/reference/krsa_show_peptides.html, docs/reference/krsa_top_hits.html, docs/reference/krsa_violin_plot.html, docs/reference/krsa_violin_plot_grouped.html, docs/reference/krsa_waterfall.html, docs/reference/krsa_zscores_plot.html, docs/reference/parse_BN_crosstabFile.html, docs/reference/ptk_pamchip_86402_mapping.html, docs/reference/reexports.html, docs/reference/stk_pamchip_87102_mapping.html

---

❓ Got questions? Check out Renovate's Docs, particularly the Getting Started section.
If you need any further assistance then you can also request help here.

---

This PR has been generated by Mend Renovate. View repository job log here.

[renovate]

Renovate is disabled

Renovate is disabled because there is no Renovate configuration file. To enable Renovate, you can either (a) change this PR's title to get a new onboarding PR, and merge the new onboarding PR, or (b) create a Renovate config file, and commit that file to your base branch.