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ftaheriyan committed Sep 13, 2024
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24 changes: 19 additions & 5 deletions 01_intro/index.html
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<li class="toctree-l2"><a class="reference internal" href="#future-releases">Future Releases</a>
<ul>
<li class="toctree-l3"><a class="reference internal" href="#experiment-1">Experiment 1</a>
</li>
<li class="toctree-l3"><a class="reference internal" href="#experiment-2">Experiment 2</a>
</li>
</ul>
</li>
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<h1 id="introduction">Introduction</h1>
<p>This document provides guidance and detailed information on the datasets released by COGITATE, how to access them, the directory structure, and a description on various types of data acquired for each modality.</p>
<h2 id="updates">Updates</h2>
<p>This is the <span style="color:red;">third version</span> (<span style="color:red;">V1.2</span>) of the COGITATE data release document. New updates or any changes to the previous versions will be announced here, and as a versioned document <a href="https://github.com/Cogitate-consortium/cogitate-data/tree/main/assets/" target="_blank">here</a> as well.</p>
<p>In <span style="color:red;">V1.2</span>, we released the second subset of magnetoencephalography (MEG) data (batch 2) in the Brain Imaging Data Structure (<a href="https://bids-specification.readthedocs.io/en/stable/" target="_blank">BIDS</a>) format, along with eye tracking data (ET) in RAW format. This subset includes data from 52 subjects who participated in <a href="../02_overview/#experiment-1-conscious-perception">Experiment 1</a>, are released, packaged in a Bundle format.</p>
<p><span style="background-color: red"><b>Attention:</b></span>
<strong>The anatomical MRI scans are not available for subjects with the following IDs: CA101, CA102, CA104, CA110, CA111, and CA152. As a result, the folder containing the “sub-CX???_ses-1_trans.fif” does not exist for these subjects under “/derivatives/coreg”. Instead, the FreeSurfer standard template (fsaverage) was utilized.</strong></p>
<p>This is the <span style="color:red;">forth version</span> (<span style="color:red;">V1.3</span>) of the COGITATE data release document. New updates or any changes to the previous versions will be announced here, and as a versioned document <a href="https://github.com/Cogitate-consortium/cogitate-data/tree/main/assets/" target="_blank">here</a> as well.</p>
<p>In <span style="color:red;">V1.3</span>, the Cogitate Consortium has released both the raw/unprocessed and <a href="https://bids-specification.readthedocs.io/en/stable/" target="_blank">BIDS</a> (Brain Imaging Data Structure) formats of fMRI (functional magnetic resonance imaging) data collected for <a href="../02_overview/#experiment-1-conscious-perception">Experiment 1</a>.</p>
<h2 id="future-releases">Future Releases</h2>
<p>Here are the items that will be released soon:</p>
<h3 id="experiment-1">Experiment 1</h3>
<ul>
<li>Unprocessed/raw format of all M-EEG data (batch 1 and batch 2)</li>
<li>Unprocessed/raw and BIDS format of fMRI data</li>
</ul>
<h3 id="experiment-2">Experiment 2</h3>
<ul>
<li>Unprocessed/raw and BIDS formats of fMRI data</li>
<li>Unprocessed/raw and BIDS formats of M-EEG data</li>
</ul>
<h2 id="previous-releases">Previous Releases</h2>
<p>Here is the list of previous COGITATE data release documents:</p>
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<td><a href="https://github.com/Cogitate-consortium/cogitate-data/blob/main/assets/documentation_v1.1/iEEG-DR-doc_2024-04-03_v1.1.pdf" target="_blank">iEEG-DR-doc_2024-04-03_v1.1</a></td>
<td>iEEG data release document</td>
</tr>
<tr>
<td>v1.2</td>
<td><a href="https://github.com/Cogitate-consortium/cogitate-data/blob/main/assets/documentation_v1.2/MEEG-Batch2-DR-doc_2024-06-10_v1.2.pdf" target="_blank">MEEG-Batch2-DR-doc_2024-06-10_v1.2</a></td>
<td>MEEG (batch 2) data release document</td>
</tr>
</tbody>
</table>
<h2 id="documentation-changes">Documentation Changes</h2>
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<td><a href="https://github.com/Cogitate-consortium/cogitate-data/blob/main/assets/documentation_v1.2/Documentation-Changes_2024-06-11_v1.1.pdf" target="_blank">Documentation-Changes_2024-06-11_v1.1</a></td>
<td>Changes from iEEG data release document (v1.1) to MEEG (batch 2) data release document (v1.2)</td>
</tr>
<tr>
<td>v1.2</td>
<td><a href="" target="_blank">Documentation-Changes_2024-06-21_v1.2</a></td>
<td>Changes from MEEG (batch 2) data release document (v1.2) to fMRI data release document (v1.3)</td>
</tr>
</tbody>
</table>
<p><span style="background-color: red"><b>Attention:</b></span>
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