Refactor formatted I/O for metadynamics before adding unformatted ver… #1118

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Job	Run time
GROMACS 2022	0s
LAMMPS	0s
GROMACS 2021	0s
GROMACS 2020	0s
NAMD	0s
NAMD3 (no CUDA)	0s
VMD	0s
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