MAINT: move imports to top cell

ComPWA · Sep 26, 2024 · 01d37cf · 01d37cf
1 parent ed2add3
commit 01d37cf
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Showing 9 changed files with 74 additions and 69 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -13,13 +13,14 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.4.0
+    rev: 0.4.1
     hooks:
       - id: check-dev-files
         args:
           - --doc-apt-packages=graphviz
           - --dev-python-version=3.12
           - --github-pages
+          - --imports-on-top
           - --no-prettierrc
           - --pin-requirements=bimonthly
           - --repo-name=compwa.github.io
@@ -146,6 +147,27 @@ repos:
             docs/_static/favicon.ico
           )$
 
+  - repo: https://github.com/nbQA-dev/nbQA
+    rev: 1.9.0
+    hooks:
+      - id: nbqa-isort
+        args: [--float-to-top]
+        exclude: >-
+          (?x)^(
+            docs/adr/.*\.ipynb|
+            docs/report/001\.ipynb|
+            docs/report/002\.ipynb|
+            docs/report/003\.ipynb|
+            docs/report/008\.ipynb|
+            docs/report/013\.ipynb|
+            docs/report/018\.ipynb|
+            docs/report/020\.ipynb|
+            docs/report/026\.ipynb|
+            docs/report/027\.ipynb|
+            docs/report/028\.ipynb|
+            docs/symbolics\.ipynb
+          )$
+
   - repo: local
     hooks:
       - id: pin-nb-requirements

diff --git a/docs/report/004.ipynb b/docs/report/004.ipynb
@@ -77,7 +77,11 @@
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
     "import sympy as sp\n",
-    "from ampform.dynamics import PhaseSpaceFactor, relativistic_breit_wigner_with_ff\n",
+    "from ampform.dynamics import (\n",
+    "    BreakupMomentumSquared,\n",
+    "    PhaseSpaceFactor,\n",
+    "    relativistic_breit_wigner_with_ff,\n",
+    ")\n",
     "from IPython.display import Math, display\n",
     "from ipywidgets import widgets\n",
     "from matplotlib import cm\n",
@@ -374,9 +378,6 @@
    },
    "outputs": [],
    "source": [
-    "from ampform.dynamics import BreakupMomentumSquared\n",
-    "\n",
-    "\n",
     "def breakup_momentum(s: sp.Symbol, m_a: sp.Symbol, m_b: sp.Symbol) -> sp.Expr:\n",
     "    return sp.sqrt(BreakupMomentumSquared(s, m_a, m_b).doit())\n",
     "\n",

diff --git a/docs/report/014.ipynb b/docs/report/014.ipynb
@@ -65,6 +65,7 @@
     "import inspect\n",
     "import itertools\n",
     "import logging\n",
+    "from collections import defaultdict\n",
     "from functools import lru_cache\n",
     "from typing import TYPE_CHECKING, Iterable, Sequence\n",
     "\n",
@@ -84,12 +85,14 @@
     "    _generate_kinematic_variables,\n",
     ")\n",
     "from ampform.helicity.decay import TwoBodyDecay\n",
+    "from ampform.helicity.naming import HelicityAmplitudeNameGenerator\n",
     "from ampform.sympy import (\n",
     "    UnevaluatedExpression,\n",
     "    create_expression,\n",
     "    implement_doit_method,\n",
     ")\n",
     "from IPython.display import Math, display\n",
+    "from qrules import ReactionInfo\n",
     "from sympy.core.symbol import Str\n",
     "from sympy.physics.quantum.spin import Rotation as Wigner\n",
     "from sympy.printing.precedence import PRECEDENCE\n",
@@ -641,10 +644,6 @@
    },
    "outputs": [],
    "source": [
-    "from collections import defaultdict\n",
-    "\n",
-    "from qrules import ReactionInfo\n",
-    "\n",
     "if TYPE_CHECKING:\n",
     "    if sys.version_info >= (3, 8):\n",
     "        from typing import Literal\n",
@@ -1460,8 +1459,6 @@
    },
    "outputs": [],
    "source": [
-    "from ampform.helicity.naming import HelicityAmplitudeNameGenerator\n",
-    "\n",
     "A = sp.IndexedBase(R\"\\mathcal{A}\")\n",
     "\n",
     "\n",

diff --git a/docs/report/015.ipynb b/docs/report/015.ipynb
@@ -61,15 +61,29 @@
    },
    "outputs": [],
    "source": [
+    "import inspect\n",
     "import logging\n",
     "import warnings\n",
     "\n",
     "import ampform\n",
     "import graphviz\n",
+    "import numpy as np\n",
     "import qrules\n",
     "import sympy as sp\n",
-    "from ampform.helicity import formulate_wigner_d\n",
+    "from ampform.helicity import (\n",
+    "    formulate_helicity_rotation_chain,\n",
+    "    formulate_rotation_chain,\n",
+    "    formulate_spin_alignment,\n",
+    "    formulate_wigner_d,\n",
+    ")\n",
+    "from ampform.kinematics import (\n",
+    "    compute_boost_chain,\n",
+    "    compute_wigner_angles,\n",
+    "    compute_wigner_rotation_matrix,\n",
+    "    create_four_momentum_symbols,\n",
+    ")\n",
     "from IPython.display import Math, display\n",
+    "from qrules.topology import create_isobar_topologies\n",
     "\n",
     "LOGGER = logging.getLogger()\n",
     "LOGGER.setLevel(logging.ERROR)\n",
@@ -518,13 +532,6 @@
    },
    "outputs": [],
    "source": [
-    "from ampform.helicity import (\n",
-    "    formulate_helicity_rotation_chain,\n",
-    "    formulate_rotation_chain,\n",
-    "    formulate_spin_alignment,\n",
-    ")\n",
-    "\n",
-    "\n",
     "def show_all_spin_matrices(transition, functor, cleanup: bool) -> None:\n",
     "    for i in transition.final_states:\n",
     "        state = transition.states[i]\n",
@@ -1136,8 +1143,6 @@
     }
    ],
    "source": [
-    "from ampform.kinematics import compute_boost_chain, create_four_momentum_symbols\n",
-    "\n",
     "momenta = create_four_momentum_symbols(topology)\n",
     "for state_id in topology.outgoing_edge_ids:\n",
     "    boosts = compute_boost_chain(topology, momenta, state_id)\n",
@@ -1198,8 +1203,6 @@
     }
    ],
    "source": [
-    "from ampform.kinematics import compute_wigner_rotation_matrix\n",
-    "\n",
     "for state_id in topology.outgoing_edge_ids:\n",
     "    expr = compute_wigner_rotation_matrix(topology, momenta, state_id)\n",
     "    display(expr)"
@@ -1218,8 +1221,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from ampform.kinematics import compute_wigner_angles\n",
-    "\n",
     "angles = {}\n",
     "for state_id in topology.outgoing_edge_ids:\n",
     "    angle_definitions = compute_wigner_angles(topology, momenta, state_id)\n",
@@ -1326,8 +1327,6 @@
     }
    ],
    "source": [
-    "import inspect\n",
-    "\n",
     "beta = sp.Symbol(\"beta_1^12\", real=True)\n",
     "beta_expr = angles[beta]\n",
     "\n",
@@ -1368,8 +1367,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import numpy as np\n",
-    "\n",
     "phsp = {\n",
     "    \"p0\": np.array([\n",
     "        [0.63140486, 0.13166435, -0.35734744, 0.07760603],\n",
@@ -1591,8 +1588,6 @@
     }
    ],
    "source": [
-    "from qrules.topology import create_isobar_topologies\n",
-    "\n",
     "topology_4body = create_isobar_topologies(4)[1]\n",
     "momenta_4body = create_four_momentum_symbols(topology_4body)\n",
     "compute_wigner_rotation_matrix(topology_4body, momenta_4body, state_id=3)"

diff --git a/docs/report/017.ipynb b/docs/report/017.ipynb
@@ -61,8 +61,6 @@
    },
    "outputs": [],
    "source": [
-    "%config InlineBackend.figure_formats = ['svg']\n",
-    "\n",
     "from __future__ import annotations\n",
     "\n",
     "import os\n",
@@ -91,6 +89,22 @@
     "warnings.filterwarnings(\"ignore\")"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "jupyter": {
+     "source_hidden": true
+    },
+    "tags": [
+     "remove-cell"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "%config InlineBackend.figure_formats = ['svg']"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,

diff --git a/docs/report/021.ipynb b/docs/report/021.ipynb
@@ -77,9 +77,9 @@
    "source": [
     "from __future__ import annotations\n",
     "\n",
-    "import os\n",
     "import itertools\n",
     "import logging\n",
+    "import os\n",
     "from typing import TYPE_CHECKING\n",
     "\n",
     "import jax.numpy as jnp\n",
@@ -97,15 +97,7 @@
     ")\n",
     "from attrs import frozen\n",
     "from IPython.display import HTML, Image, Math, display\n",
-    "from ipywidgets import (\n",
-    "    Button,\n",
-    "    Combobox,\n",
-    "    HBox,\n",
-    "    HTMLMath,\n",
-    "    Tab,\n",
-    "    VBox,\n",
-    "    interactive_output,\n",
-    ")\n",
+    "from ipywidgets import Button, Combobox, HBox, HTMLMath, Tab, VBox, interactive_output\n",
     "from matplotlib.colors import LogNorm\n",
     "from symplot import create_slider\n",
     "from sympy.core.symbol import Str\n",

diff --git a/docs/report/026.ipynb b/docs/report/026.ipynb
@@ -83,6 +83,7 @@
     "import plotly.graph_objects as go\n",
     "import sympy as sp\n",
     "from ampform.io import aslatex\n",
+    "from ampform.kinematics.phasespace import Kallen\n",
     "from ampform.sympy import unevaluated\n",
     "from IPython.display import Math\n",
     "\n",
@@ -112,9 +113,6 @@
    "outputs": [],
    "source": [
     "# @title\n",
-    "from ampform.kinematics.phasespace import Kallen\n",
-    "\n",
-    "\n",
     "@unevaluated(real=False)\n",
     "class PhaseSpaceFactor(sp.Expr):\n",
     "    s: Any\n",

diff --git a/docs/report/033.ipynb b/docs/report/033.ipynb
@@ -94,7 +94,7 @@
      "source_hidden": true
     },
     "mystnb": {
-     "code_prompt_show": "Hide warnings"
+     "code_prompt_show": "Import Python libraries"
     },
     "tags": [
      "hide-input"
@@ -108,27 +108,6 @@
     "import os\n",
     "import warnings\n",
     "\n",
-    "os.environ[\"TF_CPP_MIN_LOG_LEVEL\"] = \"3\"\n",
-    "logging.disable(logging.WARNING)\n",
-    "warnings.filterwarnings(\"ignore\")"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
-    "tags": [
-     "hide-input"
-    ]
-   },
-   "outputs": [],
-   "source": [
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
@@ -140,7 +119,11 @@
     "from iminuit import Minuit\n",
     "from matplotlib import gridspec\n",
     "from tqdm.auto import tqdm\n",
-    "from vector.backends.numpy import MomentumNumpy4D"
+    "from vector.backends.numpy import MomentumNumpy4D\n",
+    "\n",
+    "os.environ[\"TF_CPP_MIN_LOG_LEVEL\"] = \"3\"\n",
+    "logging.disable(logging.WARNING)\n",
+    "warnings.filterwarnings(\"ignore\")"
    ]
   },
   {

diff --git a/pyproject.toml b/pyproject.toml
@@ -108,6 +108,9 @@ local_scheme = "no-local-version"
 version_scheme = "post-release"
 write_to = "version.py"
 
+[tool.isort]
+profile = "black"
+
 [tool.pixi.project]
 channels = ["conda-forge"]
 platforms = ["linux-64"]