Initial commit of the glimpse code

CMakeLists.txt

@@ -0,0 +1,89 @@
+cmake_minimum_required(VERSION 2.8)
+
+# Paths to external libraries
+set(NICAEA_URL http://www.cosmostat.org/wp-content/uploads/2014/12/nicaea_2.5.tgz)
+set(NICAEA_MD5 27c4d6d46f234133fc69130e6460c2d4)
+
+set(SPARSE2D_URL https://github.com/CosmoStat/Sparse2D.git)
+
+set(NFFT_URL https://www-user.tu-chemnitz.de/~potts/nfft/download/nfft-3.3.0.tar.gz)
+set(NFFT_MD5 8efe6a43a9565f61ebf836a314b9aeb2)
+
+# Adding customized cmake module
+list(APPEND CMAKE_MODULE_PATH  "${CMAKE_SOURCE_DIR}/cmake/Modules/")
+
+include(FindPkgConfig)
+include(ExternalProject)
+
+project(glimpse)
+
+# Include external libraries
+find_package(GSL    REQUIRED)
+find_package(CCFits REQUIRED)
+find_package(FFTW   REQUIRED)
+find_package(NFFT   REQUIRED)
+find_package(Boost  COMPONENTS program_options REQUIRED)
+
+# Include external projects
+## NICAEA
+ExternalProject_Add(NICAEA
+        PREFIX NICAEA
+        URL ${NICAEA_URL}
+        URL_MD5 ${NICAEA_MD5}
+        PATCH_COMMAND patch -p1 < ${PROJECT_SOURCE_DIR}/nicaea.patch)
+        set(NICAEA_LIBRARY_DIR ${CMAKE_BINARY_DIR}/NICAEA/src/NICAEA/lib)
+        set(NICAEA_INCLUDE_DIR ${CMAKE_BINARY_DIR}/NICAEA/src/NICAEA/include)
+        set(NICAEA_LIBRARIES -lnicaea)
+
+## Sparse2D
+ExternalProject_Add(SPARSE2D
+        PREFIX SPARSE2D
+        GIT_REPOSITORY ${SPARSE2D_URL}
+        CMAKE_ARGS     -DCMAKE_INSTALL_PREFIX=${CMAKE_BINARY_DIR}/extern)
+        set(SPARSE2D_LIBRARY_DIR ${CMAKE_BINARY_DIR}/extern/lib)
+        set(SPARSE2D_INCLUDE_DIR ${CMAKE_BINARY_DIR}/extern/include)
+        set(SPARSE2D_LIBRARIES -lsparse2d)
+
+include_directories(${SPARSE2D_INCLUDE_DIR}
+		    ${GSL_INCLUDE_DIR}
+		    ${CCFITS_INCLUDE_DIR}
+		    ${CFITSIO_INCLUDE_DIR}
+		    ${Boost_INCLUDE_DIR}
+		    ${NICAEA_INCLUDE_DIR}
+		    ${NFFT_INCLUDE_DIR}
+		    ${FFTW_INCLUDE_DIR})
+
+link_directories(${SPARSE2D_LIBRARY_DIR}
+		    ${GSL_LIBRARY_DIR}
+		    ${CCFITS_LIBRARY_DIR}
+		    ${CFITSIO_LIBRARY_DIR}
+		    ${Boost_LIBRARY_DIR}
+		    ${NICAEA_LIBRARY_DIR}
+		    ${NFFT_LIBRARY_DIR}
+		    ${FFTW_LIBRARY_DIR})
+
+set(GLIMPSE_SRC src/survey.cpp
+		src/redshift_distribution.cpp
+		src/field.cpp
+		src/surface_reconstruction.cpp
+		src/starlet_2d.cpp
+		src/wavelet_transform.cpp)
+
+if(APPLE)
+  set(CMAKE_CXX_FLAGS "-DMACOS -O3 -fpermissive -fopenmp")
+  set(CMAKE_C_FLAGS "-O3 -fpermissive")
+else(APPLE)
+  set(CMAKE_CXX_FLAGS "-O3 -fpermissive -fopenmp")
+  set(CMAKE_C_FLAGS "-O3 -fpermissive")
+endif(APPLE)
+
+add_executable(glimpse src/glimpse.cpp ${GLIMPSE_SRC})
+add_dependencies(glimpse NICAEA SPARSE2D)
+target_link_libraries(glimpse ${NICAEA_LIBRARIES}
+			      ${SPARSE2D_LIBRARIES}
+			      ${Boost_LIBRARIES} 
+			      ${GSL_LIBRARIES}
+			      ${NFFT_LIBRARIES}
+			      ${FFTW_LIBRARIES}
+			      ${CCFITS_LIBRARY}
+			      ${CFITSIO_LIBRARY})