Skip to content

Issues: CovertLab/wcEcoli

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

150 Open 219 Closed
150 Open 219 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

migrate off of numpy.distutils
#1426 opened Jan 12, 2024 by 1fish2
AnalysisParcaTask fizzling when running sims with COMPRESS_OUTPUT=1
#1419 opened Dec 13, 2023 by rjuenemann
1
Anerobic simulation timed out at 7 hours sim time
#1417 opened Dec 12, 2023 by 1fish2
Updating Jenkins version
#1416 opened Dec 11, 2023 by ggsun
1
Enforce integer sampling from multinomial
#1399 opened Oct 28, 2023 by thalassemia
@1fish2
8
Reading attributes from tables in cell_paths[0] fails if the cell wasn't simulated bug
#1375 opened Aug 21, 2023 by ggsun
1
Can wcEcoli be used to simulate other species?
#1368 opened May 25, 2023 by Rabadash8820
3
Different metadata keys between sims run manually vs through Fireworks
#1323 opened Oct 27, 2022 by ggsun
4
Font not found for matplotlib
#1274 opened Mar 16, 2022 by tahorst
Select AnalysisPaths options from the command line for analysis scripts enhancement
#1221 opened Nov 8, 2021 by tahorst
1
Cloud workflow does not work with some yaml args enhancement
#1213 opened Oct 29, 2021 by tahorst
@1fish2
2
filtered stats.pearsonr subroutine
#1212 opened Oct 28, 2021 by tahorst
runParca --debug-parca raises KeyError: 'FNR-4FE-4S-CPLX__FNR-4FE-4S-CPLX__active' bug
#1165 opened Sep 2, 2021 by 1fish2
3
Parca output differences between machines bug runtime environment python versions, pips, ports, and such
#1154 opened Aug 18, 2021 by tahorst
2
Reducing the data footprint for large simulations enhancement
#1141 opened Aug 6, 2021 by charliejharrison
2
Parca for operons enhancement modeling
#1123 opened Jul 20, 2021 by 1fish2
@1fish2 @ggsun
3
Illegal instruction on Sherlock
#1107 opened Jul 13, 2021 by tahorst
anerobic nightly build fails in SimulationDaughterTask, also warnings bug
#1084 opened Jun 9, 2021 by 1fish2
4
Very low oxygen usage in sims with new flat files
#1077 opened May 30, 2021 by tahorst
2
Complete file import pipeline from EcoCyc to WCM modeling
#1067 opened May 18, 2021 by ggsun
11 of 17 tasks
Proposal: Releasing Versions of the Whole-Cell E. coli Model documentation
#1061 opened Mar 26, 2021 by U8NWXD
1
Parca for vivarium-ecoli [brainstorm thread] enhancement
#1059 opened Mar 23, 2021 by 1fish2
Removing directories of generations that initialized but terminated immediately
#1044 opened Feb 17, 2021 by bettybliu
6
accumulate, chart, and annotate daily simulation metrics testing tools
#1032 opened Feb 6, 2021 by 1fish2
ArcA activation in aerobic conditions bug
#1020 opened Jan 26, 2021 by tahorst
ProTip! Add no:assignee to see everything that’s not assigned.