Merge pull request #127 from CurricularAnalytics/development

Version 1.2.0

Manifest.toml

@@ -1,16 +1,16 @@
 # This file is machine-generated - editing it directly is not advised
 
+[[ArgTools]]
+uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
+
 [[ArnoldiMethod]]
 deps = ["LinearAlgebra", "Random", "StaticArrays"]
-git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
+git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae"
 uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.1.0"
+version = "0.2.0"
 
 [[Artifacts]]
-deps = ["Pkg"]
-git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-version = "1.3.0"
 
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@@ -35,14 +35,14 @@ version = "0.7.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b"
+git-tree-sha1 = "31d0151f5716b655421d9d75b7fa74cc4e744df2"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.25.0"
+version = "3.39.0"
 
 [[DataAPI]]
-git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d"
+git-tree-sha1 = "cc70b17275652eb47bc9e5f81635981f13cea5c8"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.6.0"
+version = "1.9.0"
 
 [[DataFrames]]
 deps = ["CategoricalArrays", "Compat", "DataAPI", "Future", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
@@ -74,21 +74,31 @@ deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[DocStringExtensions]]
-deps = ["LibGit2", "Markdown", "Pkg", "Test"]
-git-tree-sha1 = "9d4f64f79012636741cf01133158a54b24924c32"
+deps = ["LibGit2"]
+git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.8.4"
+version = "0.8.6"
 
 [[Documenter]]
 deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
 git-tree-sha1 = "395fa1554c69735802bba37d9e7d9586fd44326c"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 version = "0.24.11"
 
+[[Downloads]]
+deps = ["ArgTools", "LibCURL", "NetworkOptions"]
+uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
+
 [[Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
+[[Graphs]]
+deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
+git-tree-sha1 = "92243c07e786ea3458532e199eb3feee0e7e08eb"
+uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
+version = "1.4.1"
+
 [[Inflate]]
 git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
@@ -99,10 +109,9 @@ deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[InvertedIndices]]
-deps = ["Test"]
-git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc"
+git-tree-sha1 = "bee5f1ef5bf65df56bdd2e40447590b272a5471f"
 uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
-version = "1.0.0"
+version = "1.1.0"
 
 [[IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
@@ -115,30 +124,31 @@ git-tree-sha1 = "9f2f2f24e60305feb6ae293a617ddf06f429efc3"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 version = "0.4.3"
 
-[[JLLWrappers]]
-git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0"
-uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.2.0"
-
 [[JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
-git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
+git-tree-sha1 = "8076680b162ada2a031f707ac7b4953e30667a37"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-version = "0.21.1"
+version = "0.21.2"
+
+[[LibCURL]]
+deps = ["LibCURL_jll", "MozillaCACerts_jll"]
+uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
+
+[[LibCURL_jll]]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
+uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
 
 [[LibGit2]]
-deps = ["Printf"]
+deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
+[[LibSSH2_jll]]
+deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
+uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
+
 [[Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
-[[LightGraphs]]
-deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
-git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6"
-uuid = "093fc24a-ae57-5d10-9952-331d41423f4d"
-version = "1.3.5"
-
 [[LinearAlgebra]]
 deps = ["Libdl"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
@@ -148,19 +158,23 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "6a8a2a625ab0dea913aba95c11370589e0239ff0"
+git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.6"
+version = "0.5.9"
 
 [[Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
+[[MbedTLS_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
+
 [[MetaGraphs]]
-deps = ["JLD2", "LightGraphs", "Random"]
-git-tree-sha1 = "9cc756ced4fc5ecfff62605462c1001eec1cf324"
+deps = ["Graphs", "JLD2", "Random"]
+git-tree-sha1 = "5658bebcf7e58e7ff09aa004ff6e806478c5e93a"
 uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5"
-version = "0.6.7"
+version = "0.7.0"
 
 [[Missings]]
 deps = ["DataAPI"]
@@ -171,19 +185,25 @@ version = "0.4.5"
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
+[[MozillaCACerts_jll]]
+uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
+
+[[NetworkOptions]]
+uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
+
 [[OrderedCollections]]
-git-tree-sha1 = "4fa2ba51070ec13fcc7517db714445b4ab986bdf"
+git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.4.0"
+version = "1.4.1"
 
 [[Parsers]]
 deps = ["Dates"]
-git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc"
+git-tree-sha1 = "bfd7d8c7fd87f04543810d9cbd3995972236ba1b"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "1.1.0"
+version = "1.1.2"
 
 [[Pkg]]
-deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
+deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [[PooledArrays]]
@@ -197,7 +217,7 @@ deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets"]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[Random]]
@@ -221,9 +241,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 
 [[SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "6ccde405cf0759eba835eb613130723cb8f10ff9"
+git-tree-sha1 = "f45b34656397a1f6e729901dc9ef679610bd12b5"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.2.16"
+version = "1.3.8"
 
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -234,9 +254,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
 
 [[SimpleTraits]]
 deps = ["InteractiveUtils", "MacroTools"]
-git-tree-sha1 = "daf7aec3fe3acb2131388f93a4c409b8c7f62226"
+git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
 uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
-version = "0.9.3"
+version = "0.9.4"
 
 [[Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
@@ -253,41 +273,49 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "2f01a51c23eed210ff4a1be102c4cc8236b66e5b"
+git-tree-sha1 = "3c76dde64d03699e074ac02eb2e8ba8254d428da"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.1.0"
+version = "1.2.13"
 
 [[Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
-git-tree-sha1 = "89b390141d2fb2ef3ac2dc32e336f7a5c4810751"
+git-tree-sha1 = "d24a825a95a6d98c385001212dc9020d609f2d4f"
 uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
-version = "1.5.0"
+version = "1.8.1"
+
+[[TOML]]
+deps = ["Dates"]
+uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
 
 [[TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
-git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
+git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
-version = "1.0.0"
+version = "1.0.1"
 
 [[Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "a9ff3dfec713c6677af435d6a6d65f9744feef67"
+git-tree-sha1 = "fed34d0e71b91734bf0a7e10eb1bb05296ddbcd0"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.4.1"
+version = "1.6.0"
+
+[[Tar]]
+deps = ["ArgTools", "SHA"]
+uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
 
 [[Test]]
-deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
+deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TranscodingStreams]]
 deps = ["Random", "Test"]
-git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
+git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.5"
+version = "0.9.6"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]
@@ -297,7 +325,13 @@ uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
 [[Zlib_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6"
+deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-version = "1.2.11+18"
+
+[[nghttp2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+
+[[p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"

Project.toml

@@ -1,15 +1,15 @@
 name = "CurricularAnalytics"
 uuid = "593ffa3d-269e-5d81-88bc-c3b6809c35a6"
 authors = ["Greg Heileman <[email protected]>", "Hayden Free <[email protected]>", "Orhan Abar <[email protected]>", "Will Thompson <[email protected]>"]
-version = "1.2.2"
+version = "1.2.0"
 
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-LightGraphs = "093fc24a-ae57-5d10-9952-331d41423f4d"
+Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a"
 MetaGraphs = "626554b9-1ddb-594c-aa3c-2596fe9399a5"
@@ -21,6 +21,6 @@ CSV = "0.7"
 DataFrames = "0.21.0"
 DataStructures = "0.17.0"
 Documenter = "0.24.0"
-LightGraphs = "1.3.0"
-MetaGraphs = "0.6"
+Graphs = "1.4.0"
+MetaGraphs = "0.7.0"
 julia = "1.3, 1.4, 1.5"

docs/src/graph_algs.md

@@ -1,6 +1,6 @@
 # Graph Algorithms
 
-This toolbox makes use of a number of the graph algorithms provided in the [LightGraphs](https://juliagraphs.github.io/LightGraphs.jl/latest/index.html) package.  In addition, we have implemented a number of graph algorithms that you may find useful when developing analytics around curriculum graphs.  The functions implementing these algorithms are described next.
+This toolbox makes use of a number of the graph algorithms provided in the [Graphs.jl](https://juliagraphs.org/Graphs.jl/dev/) package.  In addition, we have implemented a number of graph algorithms that you may find useful when developing analytics around curriculum graphs.  The functions implementing these algorithms are described next.
 
 ```@docs
 dfs

examples/Introduction/Example_ECE_UA.jl

@@ -2,7 +2,7 @@
 
 using CurricularAnalytics
 using MetaGraphs
-using LightGraphs
+using Graphs
 
 # # create learning outcomes
 l = Array{LearningOutcome}(undef, 368)