-
Notifications
You must be signed in to change notification settings - Fork 21
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add imagescope arrow annotation file
- Loading branch information
Showing
2 changed files
with
488 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,205 @@ | ||
| function success = exportXML_arrow(fullname,scan_scale, task_id,workdir,Left, Top, roi_w, roi_h) | ||
| %EXPORTXML Summary of this function goes here | ||
| % process data | ||
| try | ||
| success = 0; | ||
| length = 2*(roi_w + roi_h); | ||
| lengthM = length*scan_scale; | ||
| area= roi_w* roi_h; | ||
| areaM= area * scan_scale *scan_scale; | ||
| x1 = Left; | ||
| y1 = Top; | ||
| x2 = Left + roi_w; | ||
| y2 = Top; | ||
| x3 = Left + roi_w; | ||
| y3 = Top + roi_h; | ||
| x4 = Left; | ||
| y4 = Top + roi_h; | ||
|
|
||
| lengthArrow = 100; | ||
| lengthArrowM = lengthArrow*scan_scale; | ||
| xArrow1 = Left + ceil(roi_w/2)-30; | ||
| xArrow2 = xArrow1 - lengthArrow; | ||
| yArrow = Top + ceil(roi_h/2); | ||
|
|
||
| indexdot = findstr(fullname, '.'); | ||
| imageDir = fullname(1:(indexdot(end)-1)); | ||
| filename = [imageDir,'.xml']; | ||
|
|
||
| % generate xml | ||
| % annotation information | ||
| docNode = com.mathworks.xml.XMLUtils.createDocument('Annotations'); | ||
| docRootNode = docNode.getDocumentElement; | ||
| docRootNode.setAttribute('MicronsPerPixel','0.2279'); | ||
|
|
||
|
|
||
| % image information | ||
| entry_level_info = docNode.createElement('Image_information'); | ||
| entry_level_info.setAttribute('Full_path',fullname); | ||
| docNode.getDocumentElement.appendChild(entry_level_info); | ||
|
|
||
| entry_level1 = docNode.createElement('Annotation'); | ||
| entry_level1.setAttribute('MacroName',''); | ||
| entry_level1.setAttribute('MarkupImagePath',''); | ||
| entry_level1.setAttribute('Selected','1'); | ||
| entry_level1.setAttribute('Visible','1'); | ||
| entry_level1.setAttribute('LineColor','65280'); | ||
| entry_level1.setAttribute('Type','4'); | ||
| entry_level1.setAttribute('Incremental','0'); | ||
| entry_level1.setAttribute('LineColorReadOnly','0'); | ||
| entry_level1.setAttribute('NameReadOnly','0'); | ||
| entry_level1.setAttribute('ReadOnly','0'); | ||
| entry_level1.setAttribute('Name',''); | ||
| entry_level1.setAttribute('Id','1'); | ||
| docNode.getDocumentElement.appendChild(entry_level1); | ||
|
|
||
| entry_level1_1 = docNode.createElement('Attributes'); | ||
| entry_level1.appendChild(entry_level1_1); | ||
|
|
||
| entry_level1_1_1 = docNode.createElement('Attribute'); | ||
| entry_level1_1_1.setAttribute('Name','Description'); | ||
| entry_level1_1_1.setAttribute('Id','0'); | ||
| entry_level1_1_1.setAttribute('Value',''); | ||
| entry_level1_1.appendChild(entry_level1_1_1); | ||
|
|
||
|
|
||
| entry_level1_2 = docNode.createElement('Regions'); | ||
| entry_level1.appendChild(entry_level1_2); | ||
| entry_level1_2_1 = docNode.createElement('RegionAttributeHeaders'); | ||
| entry_level1_2.appendChild(entry_level1_2_1); | ||
| entry_level1_2_1_1 = docNode.createElement('AttributeHeaders'); | ||
| entry_level1_2_1_1.setAttribute('Name','Region'); | ||
| entry_level1_2_1_1.setAttribute('Id','9999'); | ||
| entry_level1_2_1_1.setAttribute('ColumunWidth','-1'); | ||
| entry_level1_2_1.appendChild(entry_level1_2_1_1); | ||
|
|
||
| entry_level1_2_1_2 = docNode.createElement('AttributeHeaders'); | ||
| entry_level1_2_1_2.setAttribute('Name','Length'); | ||
| entry_level1_2_1_2.setAttribute('Id','9997'); | ||
| entry_level1_2_1_2.setAttribute('ColumunWidth','-1'); | ||
| entry_level1_2_1.appendChild(entry_level1_2_1_2); | ||
|
|
||
| entry_level1_2_1_3 = docNode.createElement('AttributeHeaders'); | ||
| entry_level1_2_1_3.setAttribute('Name','Area'); | ||
| entry_level1_2_1_3.setAttribute('Id','9996'); | ||
| entry_level1_2_1_3.setAttribute('ColumunWidth','-1'); | ||
| entry_level1_2_1.appendChild(entry_level1_2_1_3); | ||
|
|
||
| entry_level1_2_1_4 = docNode.createElement('AttributeHeaders'); | ||
| entry_level1_2_1_4.setAttribute('Name','Text'); | ||
| entry_level1_2_1_4.setAttribute('Id','9998'); | ||
| entry_level1_2_1_4.setAttribute('ColumunWidth','-1'); | ||
| entry_level1_2_1.appendChild(entry_level1_2_1_4); | ||
|
|
||
| entry_level1_2_1_5 = docNode.createElement('AttributeHeaders'); | ||
| entry_level1_2_1_5.setAttribute('Name','Description'); | ||
| entry_level1_2_1_5.setAttribute('Id','1'); | ||
| entry_level1_2_1_5.setAttribute('ColumunWidth','-1'); | ||
| entry_level1_2_1.appendChild(entry_level1_2_1_5); | ||
|
|
||
| % boundary | ||
| entry_level1_2_2 = docNode.createElement('Region'); | ||
| entry_level1_2.appendChild(entry_level1_2_2); | ||
| entry_level1_2_2.setAttribute('Selected','1'); | ||
| entry_level1_2_2.setAttribute('Type','1'); | ||
| entry_level1_2_2.setAttribute('Id','1'); | ||
| entry_level1_2_2.setAttribute('DisplayId','1'); | ||
| entry_level1_2_2.setAttribute('Analyze','1'); | ||
| entry_level1_2_2.setAttribute('InputRegionId','0'); | ||
| entry_level1_2_2.setAttribute('NegativeROA','0'); | ||
| entry_level1_2_2.setAttribute('Text',''); | ||
| entry_level1_2_2.setAttribute('AreaMicrons',num2str(areaM)); | ||
| entry_level1_2_2.setAttribute('LengthMicrons',num2str(lengthM)); | ||
| entry_level1_2_2.setAttribute('Area',num2str(area)); | ||
| entry_level1_2_2.setAttribute('Length',num2str(length)); | ||
| entry_level1_2_2.setAttribute('ImageFocus','0'); | ||
| entry_level1_2_2.setAttribute('ImageLocation',''); | ||
| entry_level1_2_2.setAttribute('Zoom','0.022562'); | ||
|
|
||
| entry_level1_2_2_1 = docNode.createElement('Attributes'); | ||
| entry_level1_2_2.appendChild(entry_level1_2_2_1); | ||
|
|
||
| entry_level1_2_2_2 = docNode.createElement('Vertices'); | ||
| entry_level1_2_2.appendChild(entry_level1_2_2_2); | ||
|
|
||
| entry_level1_2_2_2_1 = docNode.createElement('Vertex'); | ||
| entry_level1_2_2_2.appendChild(entry_level1_2_2_2_1); | ||
| entry_level1_2_2_2_1.setAttribute('Y',num2str(y1)); | ||
| entry_level1_2_2_2_1.setAttribute('X',num2str(x1)); | ||
|
|
||
| entry_level1_2_2_2_2 = docNode.createElement('Vertex'); | ||
| entry_level1_2_2_2.appendChild(entry_level1_2_2_2_2); | ||
| entry_level1_2_2_2_2.setAttribute('Y',num2str(y2)); | ||
| entry_level1_2_2_2_2.setAttribute('X',num2str(x2)); | ||
|
|
||
| entry_level1_2_2_2_3 = docNode.createElement('Vertex'); | ||
| entry_level1_2_2_2.appendChild(entry_level1_2_2_2_3); | ||
| entry_level1_2_2_2_3.setAttribute('Y',num2str(y3)); | ||
| entry_level1_2_2_2_3.setAttribute('X',num2str(x3)); | ||
|
|
||
| entry_level1_2_2_2_4 = docNode.createElement('Vertex'); | ||
| entry_level1_2_2_2.appendChild(entry_level1_2_2_2_4); | ||
| entry_level1_2_2_2_4.setAttribute('Y',num2str(y4)); | ||
| entry_level1_2_2_2_4.setAttribute('X',num2str(x4)); | ||
|
|
||
| % arrow | ||
|
|
||
| entry_level1_2_3 = docNode.createElement('Region'); | ||
| entry_level1_2.appendChild(entry_level1_2_3); | ||
| entry_level1_2_3.setAttribute('Selected','1'); | ||
| entry_level1_2_3.setAttribute('Type','3'); | ||
| entry_level1_2_3.setAttribute('Id','1'); | ||
| entry_level1_2_3.setAttribute('DisplayId','1'); | ||
| entry_level1_2_3.setAttribute('Analyze','1'); | ||
| entry_level1_2_3.setAttribute('InputRegionId','0'); | ||
| entry_level1_2_3.setAttribute('NegativeROA','0'); | ||
| entry_level1_2_3.setAttribute('Text',''); | ||
| entry_level1_2_3.setAttribute('AreaMicrons','0.0'); | ||
| entry_level1_2_3.setAttribute('LengthMicrons',num2str(lengthArrowM)); | ||
| entry_level1_2_3.setAttribute('Area','0.0'); | ||
| entry_level1_2_3.setAttribute('Length',num2str(lengthArrow)); | ||
| entry_level1_2_3.setAttribute('ImageFocus','0'); | ||
| entry_level1_2_3.setAttribute('ImageLocation',''); | ||
| entry_level1_2_3.setAttribute('Zoom','0.022562'); | ||
|
|
||
| entry_level1_2_3_1 = docNode.createElement('Attributes'); | ||
| entry_level1_2_3.appendChild(entry_level1_2_3_1); | ||
|
|
||
| entry_level1_2_3_2 = docNode.createElement('Vertices'); | ||
| entry_level1_2_3.appendChild(entry_level1_2_3_2); | ||
|
|
||
| entry_level1_2_3_2_1 = docNode.createElement('Vertex'); | ||
| entry_level1_2_3_2.appendChild(entry_level1_2_3_2_1); | ||
| entry_level1_2_3_2_1.setAttribute('Y',num2str(yArrow)); | ||
| entry_level1_2_3_2_1.setAttribute('X',num2str(xArrow1)); | ||
|
|
||
| entry_level1_2_3_2_2 = docNode.createElement('Vertex'); | ||
| entry_level1_2_3_2.appendChild(entry_level1_2_3_2_2); | ||
| entry_level1_2_3_2_2.setAttribute('Y',num2str(yArrow)); | ||
| entry_level1_2_3_2_2.setAttribute('X',num2str(xArrow2)); | ||
|
|
||
| entry_level1_2_4 = docNode.createElement('plots'); | ||
| entry_level1_2.appendChild(entry_level1_2_4); | ||
|
|
||
| xmlwrite(filename,docNode); | ||
|
|
||
| % delete the first line from XML file | ||
| fid = fopen(filename, 'r') ; % Open source file. | ||
| fgetl(fid) ; % Read/discard line. | ||
| buffer = fread(fid, Inf) ; % Read rest of the file. | ||
| fclose(fid); | ||
| fid = fopen(filename, 'w') ; % Open destination file. | ||
| fwrite(fid, buffer) ; % Save to file. | ||
| fclose(fid) ; | ||
|
|
||
| winopen(fullname); | ||
| % [status2,cmdout2]=system(fullname); | ||
| %[status2,cmdout2]=system(fullname,'-echo'); | ||
| success = 1; | ||
|
|
||
| catch ME | ||
| error_show(ME) | ||
| end | ||
|
|
||
| end | ||
|
|
Oops, something went wrong.