ID-353 Update terra-notebook-utils version in base.

DataBiosphere · Jun 15, 2023 · 75a0272 · 75a0272
1 parent 3e8d0a2
commit 75a0272
Show file tree

Hide file tree

Showing 16 changed files with 48 additions and 16 deletions.
diff --git a/config/conf.json b/config/conf.json
@@ -26,7 +26,7 @@
                     "tidyverse"
                 ]
             },
-            "version" : "2.1.11",
+            "version" : "2.1.12",
             "automated_flags" : {
                 "generate_docs" : true,
                 "include_in_ui" : true,
@@ -47,7 +47,7 @@
                     "hail"
                 ]
             },
-            "version" : "1.0.26",
+            "version" : "1.0.27",
             "automated_flags" : {
                 "generate_docs" : true,
                 "include_in_ui" : true,
@@ -68,7 +68,7 @@
                     "scikit-learn"
                 ]
             },
-            "version" : "1.0.15",
+            "version" : "1.0.16",
             "automated_flags" : {
                 "generate_docs" : true,
                 "include_in_ui" : true,
@@ -86,7 +86,7 @@
             "packages" : {
 
             },
-            "version" : "1.0.14",
+            "version" : "1.0.15",
             "automated_flags" : {
                 "generate_docs" : true,
                 "include_in_ui" : false,
@@ -104,7 +104,7 @@
             "packages" : {
 
             },
-            "version" : "2.1.10",
+            "version" : "2.1.11",
             "automated_flags" : {
                 "include_in_ui" : false,
                 "generate_docs" : true,
@@ -124,7 +124,7 @@
             "packages" : {
 
             },
-            "version" : "2.2.13",
+            "version" : "2.2.14",
             "automated_flags" : {
                 "include_in_ui" : true,
                 "generate_docs" : true,
@@ -143,7 +143,7 @@
             "packages" : {
 
             },
-            "version" : "2.1.22",
+            "version" : "2.1.23",
             "automated_flags" : {
                 "include_in_ui" : false,
                 "generate_docs" : false,

diff --git a/terra-jupyter-aou/CHANGELOG.md b/terra-jupyter-aou/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 2.1.23 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 2.1.22 - 2023-06-01T17:49:47.721962740Z
 
 - Update `terra-jupyter-r` to `2.1.10`

diff --git a/terra-jupyter-aou/Dockerfile b/terra-jupyter-aou/Dockerfile
@@ -1,4 +1,4 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.2.12
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-gatk:2.2.14
 
 USER root
 

diff --git a/terra-jupyter-base/CHANGELOG.md b/terra-jupyter-base/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 1.0.15 - 2023-06-15
+
+- Bump version to rebuild base image with latest jupyter-notebook-utils.
+
 ## 1.0.14 - 2023-03-13T17:26:34.128391Z
 
 - Include `jupyter lab build` step

diff --git a/terra-jupyter-bioconductor/CHANGELOG.md b/terra-jupyter-bioconductor/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 2.1.12 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 2.1.11 - 2023-06-01T17:49:47.622531112Z
 
 - Update `terra-jupyter-r` to `2.1.10`

diff --git a/terra-jupyter-bioconductor/Dockerfile b/terra-jupyter-bioconductor/Dockerfile
@@ -1 +1 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11
diff --git a/terra-jupyter-gatk-ovtf/CHANGELOG.md b/terra-jupyter-gatk-ovtf/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 0.2.11 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 0.2.10 - 2023-06-01T17:49:47.736670188Z
 
 - Update `terra-jupyter-r` to `2.1.10`

diff --git a/terra-jupyter-gatk-ovtf/Dockerfile b/terra-jupyter-gatk-ovtf/Dockerfile
@@ -1,6 +1,6 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.13 AS python
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.14 AS python
 
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11
 
 # copy everything pip installed from the python image
 COPY --from=python /opt/conda/lib/python3.7/site-packages /opt/conda/lib/python3.7/site-packages

diff --git a/terra-jupyter-gatk/CHANGELOG.md b/terra-jupyter-gatk/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 2.2.14 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 2.2.13 - 2023-06-01T17:49:47.668283846Z
 
 - Update `terra-jupyter-r` to `2.1.10`

diff --git a/terra-jupyter-gatk/Dockerfile b/terra-jupyter-gatk/Dockerfile
@@ -1,6 +1,6 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.15 AS python
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.16 AS python
 
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11
 
 USER root
 

diff --git a/terra-jupyter-hail/CHANGELOG.md b/terra-jupyter-hail/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 1.0.27 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 1.0.26 - 2023-03-13T17:26:34.162828Z
 
 - Update `terra-jupyter-base` to `1.0.14`

diff --git a/terra-jupyter-hail/Dockerfile b/terra-jupyter-hail/Dockerfile
@@ -1,4 +1,4 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.15
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.16
 USER root
 
 ENV PIP_USER=false

diff --git a/terra-jupyter-python/CHANGELOG.md b/terra-jupyter-python/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 1.0.16 - 2023-06-15
+
+- Update `terra-jupyter-base` to `1.0.15`
+
 ## 1.0.15 - 2023-03-13T17:26:34.179905Z
 
 - Update `terra-jupyter-base` to `1.0.14`

diff --git a/terra-jupyter-python/Dockerfile b/terra-jupyter-python/Dockerfile
@@ -1,4 +1,4 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.14
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.15
 USER root
 # This makes it so pip runs as root, not the user.
 ENV PIP_USER=false

diff --git a/terra-jupyter-r/CHANGELOG.md b/terra-jupyter-r/CHANGELOG.md
@@ -1,3 +1,7 @@
+## 2.1.11 - 2023-06-15
+
+- Bioconductor 3.17 release with R 4.3
+
 ## 2.1.10 - 2023-06-01T17:49:47.585402026Z
 
 - Bioconductor 3.17 release with R 4.3

diff --git a/terra-jupyter-r/Dockerfile b/terra-jupyter-r/Dockerfile
@@ -1,4 +1,4 @@
-FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.14
+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:1.0.15
 USER root
 
 COPY scripts $JUPYTER_HOME/scripts
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.10
		FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.11