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  1. tutorial tutorial Public

    Jupyter Notebook

  2. multiPrime multiPrime Public

    Forked from joybio/multiPrime

    multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). It enables a broader-sepctrum coverage while maintains high multiplexing compatibility.

    Python

  3. PriSeT_X_SADDLE PriSeT_X_SADDLE Public

    Forked from mariehoffmann/PriSeT_X_SADDLE

    Use PriSeT computed primers and libraries for multiplex PCR via SADDLE.

    MATLAB

  4. SADDLE SADDLE Public

    Forked from NinaGXie/SADDLE

    Jupyter Notebook

  5. multiplex_wormhole multiplex_wormhole Public

    Forked from mhallerud/multiplex_wormhole

    Optimization process for developing PCR primers for multiplex amplicon sequencing.

    Python

  6. Indel-Marker-Detector Indel-Marker-Detector Public

    Forked from CaiBiotech/Indel-Marker-Detector

    The provided script is a Python program that detects unique indel markers from multiple VCF files for two different strains. It uses the pysam library to read VCF files and the genome file, and the…

    Python