Fixed definedBy issue and made oio available locally.

EBISPOT · Nov 6, 2024 · 7fdbe90 · 7fdbe90
1 parent 987d91f
commit 7fdbe90
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Showing 3 changed files with 490 additions and 2 deletions.
diff --git a/dataload/linker/src/main/java/LinkerPass2.java b/dataload/linker/src/main/java/LinkerPass2.java
@@ -342,7 +342,7 @@ private static void writeIriMapping(JsonWriter jsonWriter, EntityDefinitionSet d
 		if(definitions.definingOntologyIds.size() == 1) {
 
 			// ...and is only defined in ONE ontology. Therefore that ontology is the canonical defining ontology as far as OLS is concerned
-			jsonWriter.name(DEFINITION.getText());
+			jsonWriter.name(DEFINED_BY.getText());
 			jsonWriter.beginArray();
 			jsonWriter.value(definitions.definingOntologyIds.iterator().next());
 			jsonWriter.endArray();

diff --git a/testcases/annotation-properties/gitIssue502.json b/testcases/annotation-properties/gitIssue502.json
@@ -22,7 +22,7 @@
     },
     {
       "id": "oio",
-      "ontology_purl": "https://gist.githubusercontent.com/haideriqbal/4a2b1a9aa81d9fa26cae81e0b0b7730b/raw/527665128b9be9d7d6133f9a796379600151c737/oboInOwl.owl",
+      "ontology_purl": "./testcases/annotation-properties/oboInOwl.owl",
       "base_uri": ["http://www.geneontology.org/formats/oboInOwl#"]
     }
   ]