Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update overview of available software #355

Merged
merged 1 commit into from
Dec 9, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion docs/available_software/data/json_data.json

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/available_software/data/json_data_detail.json

Large diffs are not rendered by default.

35 changes: 35 additions & 0 deletions docs/available_software/detail/Tombo.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
---
hide:
- toc
---

Tombo
=====


Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

https://github.com/nanoporetech/tombo
# Available modules


The overview below shows which Tombo installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using Tombo, load one of these modules using a `module load` command like:

```shell
module load Tombo/1.5.1-foss-2023a
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Tombo/1.5.1-foss-2023a|x|x|x|x|x|x|x|x|x|


### Tombo/1.5.1-foss-2023a

This is a list of extensions included in the module:

mappy-2.28, ont-tombo-1.5.1, pyfaidx-0.5.8
35 changes: 35 additions & 0 deletions docs/available_software/detail/rpy2.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
---
hide:
- toc
---

rpy2
====


rpy2 is an interface to R running embedded in a Python process.

https://rpy2.github.io
# Available modules


The overview below shows which rpy2 installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using rpy2, load one of these modules using a `module load` command like:

```shell
module load rpy2/3.5.15-foss-2023a
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|rpy2/3.5.15-foss-2023a|x|x|x|x|x|x|x|x|x|


### rpy2/3.5.15-foss-2023a

This is a list of extensions included in the module:

coverage-7.4.3, pytest-cov-4.1.0, rpy2-3.5.15, tzlocal-5.2
2 changes: 1 addition & 1 deletion mkdocs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -134,7 +134,7 @@ extra:
- icon: fontawesome/brands/twitter
link: https://twitter.com/eessi_hpc
# this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
generated_time: "Sat, 30 Nov 2024 at 01:42:26 UTC"
generated_time: "Mon, 09 Dec 2024 at 12:45:44 UTC"
extra_javascript:
# mermaid diagram
- https://cdn.jsdelivr.net/npm/mermaid@10/dist/mermaid.esm.min.mjs
Expand Down