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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data.json
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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data_detail.json
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2 changes: 1 addition & 1 deletion docs/available_software/detail/ALL.md
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Expand Up @@ -21,7 +21,7 @@ To start using ALL, load one of these modules using a `module load` command like
module load ALL/0.9.2-foss-2023a
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/AOFlagger.md
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Expand Up @@ -21,7 +21,7 @@ To start using AOFlagger, load one of these modules using a `module load` comman
module load AOFlagger/3.4.0-foss-2023b
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/ASE.md
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Expand Up @@ -21,7 +21,7 @@ To start using ASE, load one of these modules using a `module load` command like
module load ASE/3.22.1-gfbf-2022b
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/ATK.md
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Expand Up @@ -21,7 +21,7 @@ To start using ATK, load one of these modules using a `module load` command like
module load ATK/2.38.0-GCCcore-12.3.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Abseil.md
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Expand Up @@ -21,7 +21,7 @@ To start using Abseil, load one of these modules using a `module load` command l
module load Abseil/20230125.3-GCCcore-12.3.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Armadillo.md
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Expand Up @@ -21,7 +21,7 @@ To start using Armadillo, load one of these modules using a `module load` comman
module load Armadillo/12.8.0-foss-2023b
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Arrow.md
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Expand Up @@ -21,7 +21,7 @@ To start using Arrow, load one of these modules using a `module load` command li
module load Arrow/14.0.1-gfbf-2023a
```

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28 changes: 28 additions & 0 deletions docs/available_software/detail/BCFtools.md
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---
hide:
- toc
---

BCFtools
========


Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants

https://www.htslib.org/
# Available modules


The overview below shows which BCFtools installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using BCFtools, load one of these modules using a `module load` command like:

```shell
module load BCFtools/1.18-GCC-12.3.0
```

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|BCFtools/1.18-GCC-12.3.0|x|x|x|x|x|x|x|x|
2 changes: 1 addition & 1 deletion docs/available_software/detail/BLAST+.md
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Expand Up @@ -21,7 +21,7 @@ To start using BLAST+, load one of these modules using a `module load` command l
module load BLAST+/2.14.1-gompi-2023a
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/BLIS.md
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Expand Up @@ -21,7 +21,7 @@ To start using BLIS, load one of these modules using a `module load` command lik
module load BLIS/0.9.0-GCC-13.2.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/BWA.md
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Expand Up @@ -21,7 +21,7 @@ To start using BWA, load one of these modules using a `module load` command like
module load BWA/0.7.17-20220923-GCCcore-12.3.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Bazel.md
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Expand Up @@ -21,7 +21,7 @@ To start using Bazel, load one of these modules using a `module load` command li
module load Bazel/6.3.1-GCCcore-12.3.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/BeautifulSoup.md
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Expand Up @@ -21,7 +21,7 @@ To start using BeautifulSoup, load one of these modules using a `module load` co
module load BeautifulSoup/4.12.2-GCCcore-12.3.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Biopython.md
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Expand Up @@ -21,7 +21,7 @@ To start using Biopython, load one of these modules using a `module load` comman
module load Biopython/1.83-foss-2023a
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Bison.md
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Expand Up @@ -21,7 +21,7 @@ To start using Bison, load one of these modules using a `module load` command li
module load Bison/3.8.2-GCCcore-13.2.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Boost.MPI.md
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Expand Up @@ -21,7 +21,7 @@ To start using Boost.MPI, load one of these modules using a `module load` comman
module load Boost.MPI/1.82.0-gompi-2023a
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Boost.Python.md
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Expand Up @@ -21,7 +21,7 @@ To start using Boost.Python, load one of these modules using a `module load` com
module load Boost.Python/1.83.0-GCC-13.2.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Boost.md
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Expand Up @@ -21,7 +21,7 @@ To start using Boost, load one of these modules using a `module load` command li
module load Boost/1.83.0-GCC-13.2.0
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Brotli.md
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Expand Up @@ -21,7 +21,7 @@ To start using Brotli, load one of these modules using a `module load` command l
module load Brotli/1.1.0-GCCcore-13.2.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using Brunsli, load one of these modules using a `module load` command
module load Brunsli/0.1-GCCcore-12.3.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using CDO, load one of these modules using a `module load` command like
module load CDO/2.2.2-gompi-2023b
```

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Expand Up @@ -21,7 +21,7 @@ To start using CFITSIO, load one of these modules using a `module load` command
module load CFITSIO/4.3.1-GCCcore-13.2.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using CGAL, load one of these modules using a `module load` command lik
module load CGAL/5.6-GCCcore-12.3.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using CMake, load one of these modules using a `module load` command li
module load CMake/3.27.6-GCCcore-13.2.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using CUDA-Samples, load one of these modules using a `module load` com
module load CUDA-Samples/12.1-GCC-12.3.0-CUDA-12.1.1
```

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Expand Up @@ -21,7 +21,7 @@ To start using CUDA, load one of these modules using a `module load` command lik
module load CUDA/12.1.1
```

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Expand Up @@ -21,7 +21,7 @@ To start using Catch2, load one of these modules using a `module load` command l
module load Catch2/2.13.9-GCCcore-13.2.0
```

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Expand Up @@ -21,7 +21,7 @@ To start using Cbc, load one of these modules using a `module load` command like
module load Cbc/2.10.11-foss-2023a
```

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Expand Up @@ -21,7 +21,7 @@ To start using Cgl, load one of these modules using a `module load` command like
module load Cgl/0.60.8-foss-2023a
```

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2 changes: 1 addition & 1 deletion docs/available_software/detail/Clp.md
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Expand Up @@ -21,7 +21,7 @@ To start using Clp, load one of these modules using a `module load` command like
module load Clp/1.17.9-foss-2023a
```

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*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

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2 changes: 1 addition & 1 deletion docs/available_software/detail/CoinUtils.md
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Expand Up @@ -21,7 +21,7 @@ To start using CoinUtils, load one of these modules using a `module load` comman
module load CoinUtils/2.11.10-GCC-12.3.0
```

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*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/DB.md
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Expand Up @@ -21,7 +21,7 @@ To start using DB, load one of these modules using a `module load` command like:
module load DB/18.1.40-GCCcore-12.2.0
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/DIAMOND.md
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Expand Up @@ -21,7 +21,7 @@ To start using DIAMOND, load one of these modules using a `module load` command
module load DIAMOND/2.1.8-GCC-12.3.0
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/DP3.md
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Expand Up @@ -21,7 +21,7 @@ To start using DP3, load one of these modules using a `module load` command like
module load DP3/6.0-foss-2023b
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/DendroPy.md
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Expand Up @@ -21,7 +21,7 @@ To start using DendroPy, load one of these modules using a `module load` command
module load DendroPy/4.5.2-GCCcore-12.2.0
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/Doxygen.md
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Expand Up @@ -21,7 +21,7 @@ To start using Doxygen, load one of these modules using a `module load` command
module load Doxygen/1.9.8-GCCcore-13.2.0
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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2 changes: 1 addition & 1 deletion docs/available_software/detail/EESSI-extend.md
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Expand Up @@ -21,7 +21,7 @@ To start using EESSI-extend, load one of these modules using a `module load` com
module load EESSI-extend/2023.06-easybuild
```

*(This data was automatically generated on Thu, 20 Jun 2024 at 04:17:20 UTC)*
*(This data was automatically generated on Mon, 01 Jul 2024 at 16:18:24 UTC)*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
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