Created CriticalZone image. See #27003

.github/workflows/d4science-images.yml

@@ -22,6 +22,8 @@ jobs:
         "single-user-scientometrics-d4science/Dockerfile"
         "single-user-sobigdata-lipari23/Dockerfile"
         "single-user-sobigdata-aaai24/Dockerfile"
+        "single-user-criticalzone/Dockerfile"
+
 
   base-image:
     name: Build base image

single-user-criticalzone/Dockerfile

@@ -0,0 +1,136 @@
+#   _____       ____  _       _____        _
+#  / ____|     |  _ \(_)     |  __ \      | |         _     _
+# | (___   ___ | |_) |_  __ _| |  | | __ _| |_ __ _ _| |_ _| |_
+#  \___ \ / _ \|  _ <| |/ _` | |  | |/ _` | __/ _` |_   _|_   _|
+#  ____) | (_) | |_) | | (_| | |__| | (_| | || (_| | |_|   |_|
+# |_____/ \___/|____/|_|\__, |_____/ \__,_|\__\__,_|
+#                        __/ |
+#                       |___/
+
+ARG BASE_IMAGE=eginotebooks/d4science-base:latest
+# hadolint ignore=DL3006
+FROM $BASE_IMAGE
+
+USER root
+
+RUN apt-get update \
+    && apt-get install --no-install-recommends -y \
+        nco \
+        cdo \
+        cmake \
+        g++ \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+USER $NB_UID
+
+ARG SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True
+
+RUN mamba install -y --quiet \
+        basemap \
+        beakerx \
+        xgboost \
+        lightgbm \
+        catboost \
+        netcdf4 \
+        aiohttp \
+        graph-tool \
+        scikit-learn \
+        scikit-mobility \
+        dask-jobqueue \
+        fs \
+        rasterio \
+        contextily \
+        nb_conda_kernels \
+        nb_conda \
+    && conda clean -tipy
+
+# Pinned networkx to 2.6.3 as 2.7 makes networksns fail
+RUN pip install --no-cache-dir \
+        bicm \
+        rdp \
+        sentinelhub \
+        import_ipynb \
+        nbresuse \
+        ndlib \
+        motuclient \
+        panel==0.9.* \
+        cdlib[C]==0.2.3 \
+        cython \
+        node_conformity \
+        git+https://github.com/geopython/OWSLib.git \
+        git+https://github.com/guglielmocola/RetweetCascade.git \
+        fast-forward-indexes \
+        NEMtropy \
+        folium==0.11.0 \
+        geopy==2.0.0 \
+        hvplot==0.6.0 \
+        intake==0.6.0 \
+        intake-esm==2020.8.15 \
+        hda \
+        seaborn==0.11.0 \
+        zarr==2.5.0 \
+        holoviews \
+        networkx==2.6.3 \
+        networksns \
+        eventclf \
+        XAI-Library \
+        convrewriting \
+        git+https://github.com/guglielmocola/TwitterMonitorLib_v2.git \
+        pygm \
+        structify-net
+
+# -------------------------------
+# SoBigData ++ specific libraries
+# -------------------------------
+RUN mamba install -y --quiet \
+        pyspark \
+        transformers \
+        rtree \
+        geopandas \
+        nltk \
+        pydotplus \
+        plotly \
+        graphviz \
+        keras \
+        selenium \
+        tweepy \
+        openjdk=8 \
+   && conda clean --all
+
+RUN pip install --no-cache-dir \
+        torch \
+        torchvision \
+        torchaudio \
+        --index-url https://download.pytorch.org/whl/cpu
+
+RUN pip install --no-cache-dir \
+        pyfim \
+        pyclustering \
+        import_ipynb \
+        opencv-python \
+        simpletransformers \
+        shuffle-graph \
+        privlib \
+        ash_model \
+        cdlib==0.3.0 \
+        bayanpy \
+        dynetx==0.3.2 \
+        geolet \
+        triplex \
+        glocalx \
+        cliqs \
+        quantum-distance-based-classifier \
+        demv
+
+RUN pip install --no-cache-dir \
+        -i https://test.pypi.org/pypi/ \
+	--extra-index-url https://pypi.org/simple \
+	anonymization-crisesURV \
+	antiDiscrimination-crisesURV
+
+# -------------------------------
+# JupyterLab extensions
+# -------------------------------
+RUN pip install --no-cache-dir jupyterlab-topbar
+RUN jupyter labextension disable @jupyterlab/filebrowser-extension:share-file