MetagenomicsBari2017

The Workshop and Summer School in Advanced Computational Metagenomics was held in Bari (Italy) in June 2017 (https://elixir-iib-training.github.io/website/2017/06/19/metagenomics-workshop-and-school-bari.html).

In this repository the slides showed during the workshop and the materials used during the Summer School tutorials are availale.

Workshop on Advanced Metagenomics

Speaker	Title
Graziano Pesole (IBIOM-CNR and University of Bari, Italy)	Metagenomics: challenges, pitfalls and perspectives
Guy Cochrane (EBI, United Kingdom)	Sequencing communities at scale: dealing with the data
Rob Finn (EBI, United Kingdom)	EBI metagenomics: Trying to build analysis workflows for all metagenomics studies
Gabriel Valiente (Technical University of Catalonia, Spain)	Software and pipelines for taxonomic assignment in metagenomics
Nills Peder Willassen (The Arctic University of Norway, Norway)	Marine Metagenomics
Nicola Segata (University of Trento, Italy)	Large-scale strain-level population genomics from metagenomics
Carlotta De Filippo (IBIMET-CNR, Italy)	Transitional Metagenomes: the role of globalization in shaping the human gut microbiota
Stefano Nicotri (INFN, Italy)	INFN Technological Infrastructure for biological data analysis
Stevens Vincent (Hasselt University, Belgium)	Diversity of microorganisms in the Hedera helix phyllosphere and their role in phytoremediation of air pollution
Duccio Cavalieri (University of Florence, Italy)	Role of the mycobiome in health and disease
Omry Koren (Bar-Ilan University, Israel)	The Birth of a Microbiome
Maurizio Sanguinetti (Cattolica University, Rome, Italy)	Fecal microbiota transplantation: the microbiologist’s point of view
Marina Khachaturyan (MSU, Moscow, Russia)	Studying restriction-modification systems in a hypersaline Antarctic Deep Lake
Luigi Ceci (IBIOM-CNR, Italy)	Defining the Microbiota Composition of the Salterns of Margherita di Savoia (Italy) by Amplicon Based Next Generation Sequencing Analysis
Illumina invited talk: Lorenza Putignani (Ospedale Bambino Gesù, Rome, Italy)	Clinical microbiology and microbiota: what next?

Bari Summer School in Advanced Metagnomics - Training Materials

Speaker	Title
Marc Rossello & Guy Cochrane (EBI, United Kingdom)	Hands-on: Metagenomics data: submissions, discovery and retrieval
Rob Finn (EBI, United Kingdom)	Hands-on: Mining the data contained within the EBI metagenomics portal
Bruno Fosso & Monica Santamaria (IBIOM-CNR, Italy)	Hands-on: analysis of metagenomic amplicons (BioMaS and QIIME) and shotgun (MetaShot and Kraken) data
Gabriel Valiente (Technical University of Catalonia, Spain)	Hands-on: Statistical tools for comparative analysis of metagenomic datasets
Duccio Cavalieri & Giovanni Bacci (University of Florence, Italy)	Hands-on: Predicting metabolic potential from 16S and shotgun metagenomic data
Matteo Chiara (University of Milan, Italy)	Hands-on: Automatic functional annotation of metabarcoding and shotgun metagenomic data by using Galaxy (A-Game)