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Updated stageout to support directory asset outputs #7

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Updated stageout to support directory asset outputs #7

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27 changes: 22 additions & 5 deletions deploy/eoepca/zoo-files/stageout.py
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Original file line number Diff line number Diff line change
Expand Up @@ -59,6 +59,17 @@ def write_text(self, dest, txt, *args, **kwargs):
else:
super().write_text(dest, txt, *args, **kwargs)

def upload_directory(client, local_path, bucket, s3_path):
base_directory = os.path.basename(local_path)
for root,dirs,files in os.walk(local_path):
# Get path after the base directory
base_path = root.split(base_directory, 1)[1]
# If base_path is non-empty need to remove preceeding "/"
base_path = base_path[1:] if base_path else base_path
for file in files:
upload_path_base = os.path.join(s3_path, base_path)
upload_path = os.path.join(upload_path_base, file)
client.upload_file(os.path.join(root,file),bucket,upload_path)

client = boto3.client(
"s3",
Expand Down Expand Up @@ -106,11 +117,17 @@ def write_text(self, dest, txt, *args, **kwargs):
os.path.join(subfolder, collection_id, item.id, os.path.basename(asset.href))
)
print(f"upload {asset.href} to s3://{bucket}/{s3_path}",file=sys.stderr)
client.upload_file(
asset.get_absolute_href(),
bucket,
s3_path,
)
try:
client.upload_file(
asset.get_absolute_href(),
bucket,
s3_path,
)
except IsADirectoryError:
upload_directory(client, asset.get_absolute_href(), bucket, s3_path)
except Exception as e:
print(f"upload {item.id} to s3://{bucket}/{subfolder} failed", file=sys.stderr)
raise e
asset.href = f"s3://{bucket}/{s3_path}"
item.add_asset(key, asset)

Expand Down