X-ray-Micro-computed-Tomography : X-ray micro computed Tomography data analysis.

To install all dependancy you should install miniconda3, see below the documentation : conda_documentation

Authors

• Myriam Oger ([email protected])
• Abdelhafid Bendahmane ([email protected])
• Filip Slavkovic ([email protected])

Maintainers

• Clement Pichot ([email protected])
• Myriam Oger ([email protected])

QUICK START

Clone project

git clone https://github.com/El-Castor/X-ray-Micro-computed-Tomography.git

Clone test dataSet

cd ./X-ray-Micro-computed-Tomography
TODO : when a way to put data test in cloud is available

Create a work directory

mkdir  my_test_project
cd my_test_project

Documentation

See ./documentation/Documentation-XrayMicroCTomography.md file for details about configuration options.

Configure dependency environment

• install conda environment :

cd ./conda-env
conda env create -f XrayMicroCTomography.yml

• Activate conda environment :

conda activate XrayMicroCTomography.yml

Execute script

Note : Before launch script, be sure to fill excels file, please refer to the documentation.

python3 ./codes/Segmentation_nectary.py

LICENSE

TODO To determine with Myriam

Reference

TODO, when protocol is publish add citation