SUHMO 1.1

v1.1

Clean AMR run to make sure all runs can be launched with python scrip…

SUHMO 1.0

Gmd release (#6)

* Add all the necessary files and scripts to run the convergence analysis presented in section 4.2

* We need to initializeBed in the regrid() function otherwise we wreck the 2nd order cv in AMR

* Add a readme to explain the steps of running the chanelizing convergence analysis of section 4.3 - and the middle plot of Fig 3

* Add all the necessary files and scripts to run the SHMIP suite of test cases "A", and reproduce the results of Sec 5.1, Fig 5.
Added a m_post_proc_shmip to activate the correct post-processing analysis
Corrected the initializeBed of SqrtIBC so that in case of a regrid, it produces the same bed as initializeData

* .gitignore

* Bugfix in dump_PP.py

* Add all the necessary files and scripts to run the SHMIP suite of test cases "B", and reproduce the results of Sec 5.1, Fig 6.

* Add all the necessary files and scripts to run the SHMIP suite of test cases "E", and reproduce the results of Sec 5.1, Fig 7.

* gitignore

* Add a m_post_proc_shmip_temporal to post proc the shmip suite F of test cases
abs_QPw should be zeroed if there is no channel - removes need for max of mR
Add the contributions to mR in custom plt

* Add all the necessary files and scripts to run the SHMIP suite of test cases "F", and reproduce the results of Sec 5.2, Fig 8.

* Add all the necessary files and scripts to run the AMR test case presented in Section 6, and reproduce the results of Fig 10b and Fig 11

* As it turns out we still have the need to make sure mR is positive - overwrite commit 720c25dab5943182

* Add the script to post process the average number of cells advanced in an AMR run -- Fig 10a

* Inputs for AMR test case

* gitignore