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Update VEP example for new cat reference e114 #837

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26 changes: 13 additions & 13 deletions ensembl/conf/ini-files/felis_catus.ini
Original file line number Diff line number Diff line change
Expand Up @@ -60,21 +60,21 @@ ENSEMBL_SEARCH_IDXS = [ Domain Family Gene GenomicAlignment Sequence ]

SEARCH_TEXT = RDX

VARIATION_PARAM = rs43782442
VARIATION_TEXT = rs43782442
VARIATION_PARAM = rs785285775
VARIATION_TEXT = rs785285775

PHENOTYPE_PARAM = 104
PHENOTYPE_TEXT = Hair, long

ENSEMBL_SOUND = Mee-OW!
VEP_HGVS = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000034678.2:c.774-1157G>A\nENSFCAT00000003354.5:c.6del
VEP_ID = rs783677247\nrs783242934\nrs784481506
VEP_VCF = X 57184 . G T . . .\nA1 89599 . G A . . .\nC1 49505 . TC T . . .
VEP_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C:
VEP_ENSEMBL = X 57184 57184 G/T 1\nA1 89599 89599 G/A 1\nC1 49506 49506 C/- 1

VR_ID = rs783677247\nrs783242934\nrs784481506
VR_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C:
VR_HGVSG = NC_018738.3:g.794817A>G\nNC_018738.3:g.399892C>T\nNC_018738.3:g.794919T>G
VR_HGVSC = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000011707.4:c.-47+16G>A\nENSFCAT00000003354.5:c.6del
VR_HGVSP = ENSFCAP00000054411.1:p.Thr559Ala\nNC_018738.3:g.1396662dup\nENSFCAP00000054411.1:p.Ser593Ala
VEP_HGVS = ENSFCAT00000026400.4:c.4C>A\nENSFCAT00000071667.1:c.18+16G>A\nENSFCAT00000011879.6:c.5del
VEP_ID = rs785285775\nrs783112172\nrs784345823
VEP_VCF = X 23750244 . C A . . .\nA1 94828934 . G A . . .\nC1 37198227 . CA C . . .
VEP_SPDI = NC_018741.3:23750243:C:A\nNC_018723.3:94828933:G:A\nNC_018730.3:37198227:A:
VEP_ENSEMBL = X 23750244 23750244 C/A 1\nA1 94828934 94828934 G/A 1\nC1 37198228 37198228 A/- 1

VR_ID = rs785285775\nrs783112172\nrs784345823
VR_SPDI = NC_018741.3:23750243:C:A\nNC_018723.3:94828933:G:A\nNC_018730.3:37198227:A:
VR_HGVSG = NC_018741.3:g.23750244C>A\nNC_018723.3:g.94828934G>A\nNC_018730.3:g.37198228del
VR_HGVSC = ENSFCAT00000026400.4:c.4C>A\nENSFCAT00000071667.1:c.18+16G>A\nENSFCAT00000011879.6:c.5del
VR_HGVSP = ENSFCAP00000020470.1:p.Pro2Thr\nENSFCAP00000011018.5:p.Gln2del\nENSFCAP00000011018.5:p.Gln2ArgfsTer5
24 changes: 23 additions & 1 deletion ensembl/conf/ini-files/felis_catus_abyssinian.ini
Original file line number Diff line number Diff line change
Expand Up @@ -14,4 +14,26 @@ SPECIES_RELEASE_VERSION = 9
[ENSEMBL_EXTERNAL_INDEXERS]

[EXTERNAL_GENOME_BROWSERS]



[SAMPLE_DATA]

SEARCH_TEXT = RDX

VARIATION_PARAM = rs43782442
VARIATION_TEXT = rs43782442

PHENOTYPE_PARAM = 104
PHENOTYPE_TEXT = Hair, long

VEP_HGVS = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000034678.2:c.774-1157G>A\nENSFCAT00000003354.5:c.6del
VEP_ID = rs783677247\nrs783242934\nrs784481506
VEP_VCF = X 57184 . G T . . .\nA1 89599 . G A . . .\nC1 49505 . TC T . . .
VEP_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C:
VEP_ENSEMBL = X 57184 57184 G/T 1\nA1 89599 89599 G/A 1\nC1 49506 49506 C/- 1

VR_ID = rs783677247\nrs783242934\nrs784481506
VR_SPDI = NC_018741.3:57183:G:T\nNC_018723.3:89598:G:A\nNC_018730.3:49505:C:
VR_HGVSG = NC_018738.3:g.794817A>G\nNC_018738.3:g.399892C>T\nNC_018738.3:g.794919T>G
VR_HGVSC = ENSFCAT00000036854.2:c.4G>T\nENSFCAT00000011707.4:c.-47+16G>A\nENSFCAT00000003354.5:c.6del
VR_HGVSP = ENSFCAP00000054411.1:p.Thr559Ala\nNC_018738.3:g.1396662dup\nENSFCAP00000054411.1:p.Ser593Ala