fix orphan refs in doc

EpiModel · Apr 5, 2023 · cca10ac · cca10ac
1 parent 77639b5
commit cca10ac
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Showing 10 changed files with 18 additions and 20 deletions.
diff --git a/R/step_templates.R b/R/step_templates.R
@@ -20,8 +20,8 @@
 #' Some basic ones are provided by the `slurmworkflow` package. They instruct
 #' the workflow to run either a bash script, a set of bash lines given as a
 #' character vector or an R script.
-#' Additional Step Templates can be created to simplify specific tasks, see the
-#' `vignette("making-a-custom-step-template")` for details.
+#' Additional Step Templates can be created to simplify specific tasks. The
+#' easiest way to do so is as wrappers around existing templates.
 #'
 #' @export
 step_tmpl_bash_lines <- function(bash_lines) {

diff --git a/R/workflow.R b/R/workflow.R
@@ -138,8 +138,7 @@ get_workflow_root <- function(wf_summary = NULL) {
 #' Alter the Next Step of a Running Workflow
 #'
 #' This function allows a running job to alter the workflow sequence by choosing
-#' which step to run after the current one. (See
-#' `vignette("altering-the-order-of-steps")`)
+#' which step to run after the current one.
 #'
 #' @param next_step A scalar number coercible to integer instructing the
 #'   workflow system which step to run next

diff --git a/man/change_next_workflow_step.Rd b/man/change_next_workflow_step.Rd
diff --git a/man/step_tmpl_bash_lines.Rd b/man/step_tmpl_bash_lines.Rd
diff --git a/man/step_tmpl_bash_script.Rd b/man/step_tmpl_bash_script.Rd
diff --git a/man/step_tmpl_do_call.Rd b/man/step_tmpl_do_call.Rd
diff --git a/man/step_tmpl_do_call_script.Rd b/man/step_tmpl_do_call_script.Rd
diff --git a/man/step_tmpl_map.Rd b/man/step_tmpl_map.Rd
diff --git a/man/step_tmpl_map_script.Rd b/man/step_tmpl_map_script.Rd
diff --git a/man/step_tmpl_rscript.Rd b/man/step_tmpl_rscript.Rd