Repository for all the scripts and methods used for Ab10 genome assembly. The scripts are organized based on the Supplementary Methods of the manuscript. You can find the scripts for each section in separate folders.
- PacBio Assembly
- Nanopore Assembly
- Optical-map Assembly
- Assembly merging and gap closing
- AGP construction
- Gene Prediction
- TE annotation
- Centromere and repeat analyses
- Assembly complementation analyses
Scripts in this repository are licensed under General Public License v3.
For information inquiry please email R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, or Doreen Ware.