Merge pull request #1 from pranavmishra90/develop

Develop to main to fix merge issue

.gitattributes

@@ -37,11 +37,14 @@ metadata/objects/** annex.largefiles=((largerthan=0))
 
 # Raw Data
 /data/raw/**/*.md annex.largefiles=nothing
-/data/raw/**/*.csv annex.largefiles=nothing
+/data/raw/**/*.csv annex.largefiles=((largerthan=50MB))
 /data/raw annex.largefiles=((largerthan=0))
 
 # Analyzed Data
-/data/analysis/**/*.csv annex.largefiles=((largerthan=50MB))
+/data/analysis/**/*.csv annex.largefiles=((largerthan=10MB))
+
+# Research Output Data
+/data/output annex.largefiles=((largerthan=10MB))
 
 # Data files types
 *.parquet annex.largefiles=((largerthan=0))
@@ -58,5 +61,4 @@ metadata/objects/** annex.largefiles=((largerthan=0))
 *.ppt annex.largefiles=((largerthan=0))
 
 # All other binary files
-* annex.largefiles=((mimeencoding=binary)and(largerthan=10MB))
-**/.git* annex.largefiles=nothing
+* annex.largefiles=((mimeencoding=binary)and(largerthan=10MB))

.github/workflows/test-quarto-publish.yml

@@ -1,5 +1,10 @@
 on:
   push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
   workflow_dispatch:
 
 concurrency:

data/analysis/readme.md

@@ -0,0 +1,3 @@
+# Analyzed Data
+
+This directory is for the storage of research data which has been produced by analyzing the raw data, found in `/data/raw-data/`. 'Analyzed data' is also known as 'intermediate data'.

data/output/readme.md

@@ -0,0 +1,3 @@
+# Output Data
+
+This directory is for the storage of research data which has been produced through further analysis, combination, and/or selection from the intermediate / analysis directory found in `/data/analysis/`. Data found in this directory is suitable for publication / distribution.

data/raw/readme.md

@@ -0,0 +1,3 @@
+# Raw Data
+
+This directory is for the storage of a project's raw data. This can be from primary sources such as qPCR machine outputs, microscope images, clinical data, tabular datasets, etc. Files in this directory should be considered read-only. Any calculations, analysis, or interpretation based on these files should be placed in the `/data/analysis` directory.

docs/readme.md

@@ -0,0 +1,3 @@
+# Documentation
+
+This directory can provide documentation about the dataset, how to use it, what tools may be necessary to reproduce the project, etc.