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Fix for new Python versions #5

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Some functions have been deprecated in new Python versions, such as np.asscalar. I have updated the code in construction.py to address these deprecations, making it compatible with Python 3.11 and 3.12. The affected functions were:

  • _hydrophobic_selection2
  • _RMST_prim_algorithm
  • determine_if_DNA_residues_are_linked
  • distance_between_two_atoms

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