Calculates observed bulk density #133
Workflow file for this run
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| name: Tests for JANUS | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup system | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libnetcdff-dev netcdf-bin | |
| - name: Get SOCRATES | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'nichollsh/SOCRATES' | |
| path: 'SOCRATES' | |
| - uses: actions/cache@v3 | |
| id: cache-socrates | |
| with: | |
| path: | | |
| SOCRATES/bin | |
| SOCRATES/sbin | |
| SOCRATES/set_rad_env | |
| key: socrates-${{ hashFiles('SOCRATES/version') }} | |
| - name: Build SOCRATES | |
| if: steps.cache-socrates.outputs.cache-hit != 'true' | |
| run: | | |
| export LD_LIBRARY_PATH="" | |
| cd SOCRATES | |
| ./configure | |
| ./build_code | |
| cd .. | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: cache-virtualenv | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} | |
| - name: Build JANUS | |
| if: steps.cache-virtualenv.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install -e .[develop] | |
| - uses: actions/cache@v3 | |
| id: cache-fwl-data | |
| with: | |
| path: /home/runner/work/fwl_data | |
| key: fwl-data-1 | |
| - name: Test with pytest | |
| run: | | |
| export FWL_DATA="/home/runner/work/fwl_data" | |
| export RAD_DIR="/home/runner/work/JANUS/JANUS/SOCRATES" | |
| coverage run -m pytest | |
| - name: Report coverage | |
| run: | | |
| coverage json | |
| export TOTAL=$(python -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| echo "### Total coverage: ${TOTAL}%" >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| coverage report >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| - name: Make coverage badge | |
| if: ${{ github.ref == 'refs/heads/master' && matrix.python-version == '3.10' }} | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.GIST_TOKEN }} | |
| gistID: 99391a66bb9229771504c3a4db611d05 | |
| filename: covbadge.svg | |
| label: Coverage | |
| message: ${{ env.total }}% | |
| minColorRange: 50 | |
| maxColorRange: 90 | |
| valColorRange: ${{ env.total }} |