Dependency update after v2.0.0 (#3278)

* Bump ipython from 8.22.2 to 8.23.0 (#3143)

Bumps [ipython](https://github.com/ipython/ipython) from 8.22.2 to 8.23.0.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@8.22.2...8.23.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump pybind11-global from 2.11.1 to 2.12.0 (#3145)

Bumps [pybind11-global](https://github.com/pybind/pybind11) from 2.11.1 to 2.12.0.
- [Release notes](https://github.com/pybind/pybind11/releases)
- [Changelog](https://github.com/pybind/pybind11/blob/master/docs/changelog.rst)
- [Commits](pybind/pybind11@v2.11.1...v2.12.0)

---
updated-dependencies:
- dependency-name: pybind11-global
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump polyscope from 2.1.0 to 2.2.1 (#3146)

Bumps [polyscope](https://github.com/nmwsharp/polyscope) from 2.1.0 to 2.2.1.
- [Release notes](https://github.com/nmwsharp/polyscope/releases)
- [Commits](nmwsharp/polyscope@v2.1.0...v2.2.1)

---
updated-dependencies:
- dependency-name: polyscope
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  update-type: version-update:semver-minor
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* Bump ipykernel from 6.29.3 to 6.29.4 (#3144)

Bumps [ipykernel](https://github.com/ipython/ipykernel) from 6.29.3 to 6.29.4.
- [Release notes](https://github.com/ipython/ipykernel/releases)
- [Changelog](https://github.com/ipython/ipykernel/blob/v6.29.4/CHANGELOG.md)
- [Commits](ipython/ipykernel@v6.29.3...v6.29.4)

---
updated-dependencies:
- dependency-name: ipykernel
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump pybind11 from 2.11.1 to 2.12.0 (#3147)

Bumps [pybind11](https://github.com/pybind/pybind11) from 2.11.1 to 2.12.0.
- [Release notes](https://github.com/pybind/pybind11/releases)
- [Changelog](https://github.com/pybind/pybind11/blob/master/docs/changelog.rst)
- [Commits](pybind/pybind11@v2.11.1...v2.12.0)

---
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* Bump pycparser from 2.21 to 2.22 (#3148)

Bumps [pycparser](https://github.com/eliben/pycparser) from 2.21 to 2.22.
- [Release notes](https://github.com/eliben/pycparser/releases)
- [Changelog](https://github.com/eliben/pycparser/blob/main/CHANGES)
- [Commits](eliben/pycparser@release_v2.21...release_v2.22)

---
updated-dependencies:
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* Bump ruff from 0.3.4 to 0.3.5 (#3149)

* Bump ruff from 0.3.4 to 0.3.5

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.3.4 to 0.3.5.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.3.4...v0.3.5)

---
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  dependency-type: direct:development
  update-type: version-update:semver-patch
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* 🚨 Ruff 0.3.5

---------

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* Bump contourpy from 1.2.0 to 1.2.1 (#3157)

Bumps [contourpy](https://github.com/contourpy/contourpy) from 1.2.0 to 1.2.1.
- [Release notes](https://github.com/contourpy/contourpy/releases)
- [Changelog](https://github.com/contourpy/contourpy/blob/v1.2.1/docs/changelog.rst)
- [Commits](contourpy/contourpy@v1.2.0...v1.2.1)

---
updated-dependencies:
- dependency-name: contourpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump send2trash from 1.8.2 to 1.8.3 (#3158)

Bumps [send2trash](https://github.com/arsenetar/send2trash) from 1.8.2 to 1.8.3.
- [Release notes](https://github.com/arsenetar/send2trash/releases)
- [Changelog](https://github.com/arsenetar/send2trash/blob/master/CHANGES.rst)
- [Commits](https://github.com/arsenetar/send2trash/commits)

---
updated-dependencies:
- dependency-name: send2trash
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  update-type: version-update:semver-patch
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* Bump parso from 0.8.3 to 0.8.4 (#3156)

Bumps [parso](https://github.com/davidhalter/parso) from 0.8.3 to 0.8.4.
- [Changelog](https://github.com/davidhalter/parso/blob/v0.8.4/CHANGELOG.rst)
- [Commits](davidhalter/parso@v0.8.3...v0.8.4)

---
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  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump numexpr from 2.9.0 to 2.10.0 (#3155)

Bumps [numexpr](https://github.com/pydata/numexpr) from 2.9.0 to 2.10.0.
- [Release notes](https://github.com/pydata/numexpr/releases)
- [Changelog](https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst)
- [Commits](pydata/numexpr@v2.9.0...v2.10.0)

---
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- dependency-name: numexpr
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* Bump fonttools from 4.50.0 to 4.51.0 (#3160)

Bumps [fonttools](https://github.com/fonttools/fonttools) from 4.50.0 to 4.51.0.
- [Release notes](https://github.com/fonttools/fonttools/releases)
- [Changelog](https://github.com/fonttools/fonttools/blob/main/NEWS.rst)
- [Commits](fonttools/fonttools@4.50.0...4.51.0)

---
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  update-type: version-update:semver-minor
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* Bump typing-extensions from 4.10.0 to 4.11.0 (#3164)

Bumps [typing-extensions](https://github.com/python/typing_extensions) from 4.10.0 to 4.11.0.
- [Release notes](https://github.com/python/typing_extensions/releases)
- [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md)
- [Commits](python/typing_extensions@4.10.0...4.11.0)

---
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  update-type: version-update:semver-minor
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* Bump matplotlib from 3.8.3 to 3.8.4 (#3163)

Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.8.3 to 3.8.4.
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.8.3...v3.8.4)

---
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  update-type: version-update:semver-patch
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* Bump pyvista from 0.43.4 to 0.43.5 (#3162)

Bumps [pyvista](https://github.com/pyvista/pyvista) from 0.43.4 to 0.43.5.
- [Release notes](https://github.com/pyvista/pyvista/releases)
- [Commits](pyvista/pyvista@v0.43.4...v0.43.5)

---
updated-dependencies:
- dependency-name: pyvista
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump nbformat from 5.10.3 to 5.10.4 (#3161)

Bumps [nbformat](https://github.com/jupyter/nbformat) from 5.10.3 to 5.10.4.
- [Release notes](https://github.com/jupyter/nbformat/releases)
- [Changelog](https://github.com/jupyter/nbformat/blob/main/CHANGELOG.md)
- [Commits](jupyter/nbformat@v5.10.3...v5.10.4)

---
updated-dependencies:
- dependency-name: nbformat
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump myst-nb from 1.0.0 to 1.1.0 (#3177)

Bumps [myst-nb](https://github.com/executablebooks/myst-nb) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/executablebooks/myst-nb/releases)
- [Changelog](https://github.com/executablebooks/MyST-NB/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-NB@v1.0.0...v1.1.0)

---
updated-dependencies:
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  update-type: version-update:semver-minor
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* Bump scikit-learn from 1.4.1.post1 to 1.4.2 (#3178)

Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.4.1.post1 to 1.4.2.
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.4.1.post1...1.4.2)

---
updated-dependencies:
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  dependency-type: direct:production
  update-type: version-update:semver-patch
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* Bump h5py from 3.10.0 to 3.11.0 (#3179)

Bumps [h5py](https://github.com/h5py/h5py) from 3.10.0 to 3.11.0.
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.10.0...3.11.0)

---
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  update-type: version-update:semver-minor
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* Bump filelock from 3.13.3 to 3.13.4 (#3181)

Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.13.3 to 3.13.4.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst)
- [Commits](tox-dev/filelock@3.13.3...3.13.4)

---
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- dependency-name: filelock
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  update-type: version-update:semver-patch
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* Bump pandas from 2.2.1 to 2.2.2 (#3182)

Bumps [pandas](https://github.com/pandas-dev/pandas) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.1...v2.2.2)

---
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  update-type: version-update:semver-patch
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* Bump joblib from 1.3.2 to 1.4.0 (#3183)

Bumps [joblib](https://github.com/joblib/joblib) from 1.3.2 to 1.4.0.
- [Release notes](https://github.com/joblib/joblib/releases)
- [Changelog](https://github.com/joblib/joblib/blob/main/CHANGES.rst)
- [Commits](joblib/joblib@1.3.2...1.4.0)

---
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  update-type: version-update:semver-minor
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* Bump pyzmq from 25.1.2 to 26.0.0 (#3184)

Bumps [pyzmq](https://github.com/zeromq/pyzmq) from 25.1.2 to 26.0.0.
- [Release notes](https://github.com/zeromq/pyzmq/releases)
- [Commits](zeromq/pyzmq@v25.1.2...v26.0.0)

---
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  update-type: version-update:semver-major
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* Bump virtualenv from 20.25.1 to 20.25.3 (#3202)

Bumps [virtualenv](https://github.com/pypa/virtualenv) from 20.25.1 to 20.25.3.
- [Release notes](https://github.com/pypa/virtualenv/releases)
- [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst)
- [Commits](pypa/virtualenv@20.25.1...20.25.3)

---
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* Bump imageio from 2.34.0 to 2.34.1 (#3198)

Bumps [imageio](https://github.com/imageio/imageio) from 2.34.0 to 2.34.1.
- [Release notes](https://github.com/imageio/imageio/releases)
- [Changelog](https://github.com/imageio/imageio/blob/master/CHANGELOG.md)
- [Commits](imageio/imageio@v2.34.0...v2.34.1)

---
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- dependency-name: imageio
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  update-type: version-update:semver-patch
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* Bump pluggy from 1.4.0 to 1.5.0 (#3199)

Bumps [pluggy](https://github.com/pytest-dev/pluggy) from 1.4.0 to 1.5.0.
- [Changelog](https://github.com/pytest-dev/pluggy/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pluggy@1.4.0...1.5.0)

---
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* Bump traitlets from 5.14.2 to 5.14.3 (#3200)

Bumps [traitlets](https://github.com/ipython/traitlets) from 5.14.2 to 5.14.3.
- [Release notes](https://github.com/ipython/traitlets/releases)
- [Changelog](https://github.com/ipython/traitlets/blob/main/CHANGELOG.md)
- [Commits](ipython/traitlets@v5.14.2...v5.14.3)

---
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* Bump notebook from 7.1.2 to 7.1.3 (#3201)

Bumps [notebook](https://github.com/jupyter/notebook) from 7.1.2 to 7.1.3.
- [Release notes](https://github.com/jupyter/notebook/releases)
- [Changelog](https://github.com/jupyter/notebook/blob/@jupyter-notebook/[email protected]/CHANGELOG.md)
- [Commits](https://github.com/jupyter/notebook/compare/@jupyter-notebook/[email protected]...@jupyter-notebook/[email protected])

---
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* Bump matplotlib-inline from 0.1.6 to 0.1.7 (#3203)

Bumps [matplotlib-inline](https://github.com/ipython/matplotlib-inline) from 0.1.6 to 0.1.7.
- [Commits](ipython/matplotlib-inline@0.1.6...0.1.7)

---
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* Bump identify from 2.5.35 to 2.5.36 (#3205)

Bumps [identify](https://github.com/pre-commit/identify) from 2.5.35 to 2.5.36.
- [Commits](pre-commit/identify@v2.5.35...v2.5.36)

---
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* Bump pyzmq from 26.0.0 to 26.0.2 (#3204)

Bumps [pyzmq](https://github.com/zeromq/pyzmq) from 26.0.0 to 26.0.2.
- [Release notes](https://github.com/zeromq/pyzmq/releases)
- [Commits](zeromq/pyzmq@v26.0.0...v26.0.2)

---
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* Bump sphinx from 7.2.6 to 7.3.7 (#3207)

Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.6 to 7.3.7.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v7.2.6...v7.3.7)

---
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* Bump ruff from 0.3.5 to 0.4.1 (#3206)

* Bump ruff from 0.3.5 to 0.4.1

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.3.5 to 0.4.1.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.3.5...v0.4.1)

---
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* 🚨 Safe fixes

* 🚨 More manual fixes

* 🚨 Pre-commit and safe fixes

* 🚨 Ruff 0.4.1 fixes

---------

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* ⬆️ Bump numba-scipy from 1e2f224 to 0.4.0 (#3209)

* Bump virtualenv from 20.25.3 to 20.26.0 (#3218)

Dependabot couldn't find the original pull request head commit, 44717c2.

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* Bump gmsh-interop from 2021.1.1 to 2024.1 (#3219)

Dependabot couldn't find the original pull request head commit, 35c80eb.

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* Bump myst-parser from 2.0.0 to 3.0.1 (#3220)

Dependabot couldn't find the original pull request head commit, 992252a.

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* Bump pytools from 2024.1.1 to 2024.1.2 (#3221)

Dependabot couldn't find the original pull request head commit, 8a0c9d4.

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pyvista from 0.43.5 to 0.43.6 (#3222)

Dependabot couldn't find the original pull request head commit, 6e158fd.

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pytest from 8.1.1 to 8.2.0 (#3223)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.2.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.1.1...8.2.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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* Bump ipython from 8.23.0 to 8.24.0 (#3225)

Bumps [ipython](https://github.com/ipython/ipython) from 8.23.0 to 8.24.0.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@8.23.0...8.24.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump platformdirs from 4.2.0 to 4.2.1 (#3226)

Bumps [platformdirs](https://github.com/platformdirs/platformdirs) from 4.2.0 to 4.2.1.
- [Release notes](https://github.com/platformdirs/platformdirs/releases)
- [Changelog](https://github.com/platformdirs/platformdirs/blob/main/CHANGES.rst)
- [Commits](tox-dev/platformdirs@4.2.0...4.2.1)

---
updated-dependencies:
- dependency-name: platformdirs
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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* Bump tinycss2 from 1.2.1 to 1.3.0 (#3228)

Bumps [tinycss2](https://github.com/Kozea/tinycss2) from 1.2.1 to 1.3.0.
- [Release notes](https://github.com/Kozea/tinycss2/releases)
- [Changelog](https://github.com/Kozea/tinycss2/blob/main/docs/changelog.rst)
- [Commits](Kozea/tinycss2@v1.2.1...v1.3.0)

---
updated-dependencies:
- dependency-name: tinycss2
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump coverage[toml] from 7.4.4 to 7.5.0 (#3229)

Bumps [coverage[toml]](https://github.com/nedbat/coveragepy) from 7.4.4 to 7.5.0.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.4.4...7.5.0)

---
updated-dependencies:
- dependency-name: coverage[toml]
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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* Bump ruff from 0.4.1 to 0.4.2 (#3224)

* Bump ruff from 0.4.1 to 0.4.2

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.4.1 to 0.4.2.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.4.1...v0.4.2)

---
updated-dependencies:
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* 🚨 Ruff 0.4.2 fixes

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: james <[email protected]>

* Bump threadpoolctl from 3.4.0 to 3.5.0 (#3248)

Bumps [threadpoolctl](https://github.com/joblib/threadpoolctl) from 3.4.0 to 3.5.0.
- [Release notes](https://github.com/joblib/threadpoolctl/releases)
- [Changelog](https://github.com/joblib/threadpoolctl/blob/master/CHANGES.md)
- [Commits](joblib/threadpoolctl@3.4.0...3.5.0)

---
updated-dependencies:
- dependency-name: threadpoolctl
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump jsonschema from 4.21.1 to 4.22.0 (#3246)

Bumps [jsonschema](https://github.com/python-jsonschema/jsonschema) from 4.21.1 to 4.22.0.
- [Release notes](https://github.com/python-jsonschema/jsonschema/releases)
- [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst)
- [Commits](python-jsonschema/jsonschema@v4.21.1...v4.22.0)

---
updated-dependencies:
- dependency-name: jsonschema
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump joblib from 1.4.0 to 1.4.2 (#3245)

Bumps [joblib](https://github.com/joblib/joblib) from 1.4.0 to 1.4.2.
- [Release notes](https://github.com/joblib/joblib/releases)
- [Changelog](https://github.com/joblib/joblib/blob/main/CHANGES.rst)
- [Commits](joblib/joblib@1.4.0...1.4.2)

---
updated-dependencies:
- dependency-name: joblib
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* Bump ruff from 0.4.2 to 0.4.3 (#3247)

* Bump ruff from 0.4.2 to 0.4.3

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.4.2 to 0.4.3.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.4.2...v0.4.3)

---
updated-dependencies:
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* 🚨 Ruff 0.4.3 fixes

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: james <[email protected]>

* Bump jupytext from 1.16.1 to 1.16.2 (#3256)

Bumps [jupytext](https://github.com/mwouts/jupytext) from 1.16.1 to 1.16.2.
- [Release notes](https://github.com/mwouts/jupytext/releases)
- [Changelog](https://github.com/mwouts/jupytext/blob/main/CHANGELOG.md)
- [Commits](mwouts/jupytext@v1.16.1...v1.16.2)

---
updated-dependencies:
- dependency-name: jupytext
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump virtualenv from 20.26.0 to 20.26.1 (#3255)

Bumps [virtualenv](https://github.com/pypa/virtualenv) from 20.26.0 to 20.26.1.
- [Release notes](https://github.com/pypa/virtualenv/releases)
- [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst)
- [Commits](pypa/virtualenv@20.26.0...20.26.1)

---
updated-dependencies:
- dependency-name: virtualenv
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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* Bump pygments from 2.17.2 to 2.18.0 (#3253)

Bumps [pygments](https://github.com/pygments/pygments) from 2.17.2 to 2.18.0.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](pygments/pygments@2.17.2...2.18.0)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump filelock from 3.13.4 to 3.14.0 (#3252)

Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.13.4 to 3.14.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst)
- [Commits](tox-dev/filelock@3.13.4...3.14.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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* Bump pyvista from 0.43.6 to 0.43.7 (#3258)

Bumps [pyvista](https://github.com/pyvista/pyvista) from 0.43.6 to 0.43.7.
- [Release notes](https://github.com/pyvista/pyvista/releases)
- [Commits](pyvista/pyvista@v0.43.6...v0.43.7)

---
updated-dependencies:
- dependency-name: pyvista
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* Bump pyzmq from 26.0.2 to 26.0.3 (#3262)

Bumps [pyzmq](https://github.com/zeromq/pyzmq) from 26.0.2 to 26.0.3.
- [Release notes](https://github.com/zeromq/pyzmq/releases)
- [Commits](zeromq/pyzmq@v26.0.2...v26.0.3)

---
updated-dependencies:
- dependency-name: pyzmq
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* Bump sqlalchemy from 2.0.29 to 2.0.30 (#3261)

Bumps [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) from 2.0.29 to 2.0.30.
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

---
updated-dependencies:
- dependency-name: sqlalchemy
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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* Bump babel from 2.14.0 to 2.15.0 (#3260)

Bumps [babel](https://github.com/python-babel/babel) from 2.14.0 to 2.15.0.
- [Release notes](https://github.com/python-babel/babel/releases)
- [Changelog](https://github.com/python-babel/babel/blob/master/CHANGES.rst)
- [Commits](python-babel/babel@v2.14.0...v2.15.0)

---
updated-dependencies:
- dependency-name: babel
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump nbconvert from 7.16.3 to 7.16.4 (#3259)

Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 7.16.3 to 7.16.4.
- [Release notes](https://github.com/jupyter/nbconvert/releases)
- [Changelog](https://github.com/jupyter/nbconvert/blob/main/CHANGELOG.md)
- [Commits](jupyter/nbconvert@v7.16.3...v7.16.4)

---
updated-dependencies:
- dependency-name: nbconvert
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* Bump coverage[toml] from 7.5.0 to 7.5.1 (#3263)

Bumps [coverage[toml]](https://github.com/nedbat/coveragepy) from 7.5.0 to 7.5.1.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.5.0...7.5.1)

---
updated-dependencies:
- dependency-name: coverage[toml]
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pre-commit from 3.7.0 to 3.7.1 (#3269)

Bumps [pre-commit](https://github.com/pre-commit/pre-commit) from 3.7.0 to 3.7.1.
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v3.7.0...v3.7.1)

---
updated-dependencies:
- dependency-name: pre-commit
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump astroid from 3.1.0 to 3.2.0 (#3270)

Bumps [astroid](https://github.com/pylint-dev/astroid) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/pylint-dev/astroid/releases)
- [Changelog](https://github.com/pylint-dev/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v3.1.0...v3.2.0)

---
updated-dependencies:
- dependency-name: astroid
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

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* Bump gmsh from 4.12.2 to 4.13.0 (#3271)

Bumps [gmsh](https://gmsh.info) from 4.12.2 to 4.13.0.

---
updated-dependencies:
- dependency-name: gmsh
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* Bump ruff from 0.4.3 to 0.4.4 (#3268)

* Bump ruff from 0.4.3 to 0.4.4

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.4.3 to 0.4.4.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.4.3...v0.4.4)

---
updated-dependencies:
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* 👷 Update pre-commit

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: james <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: james <[email protected]>
Co-authored-by: Oliver Funk <[email protected]>
Co-authored-by: je-cook <[email protected]>

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
     - id: trailing-whitespace
       exclude: test_data
@@ -12,7 +12,7 @@ repos:
       exclude: test_data
 
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.4
+    rev: v0.4.4
     hooks:
       - id: ruff
         args: [ --fix ]

bluemira/base/look_and_feel.py

@@ -176,7 +176,7 @@ def count_slocs(
                         continue
 
     lines[".py"] += LOCAL_LINES
-    lines["total"] = sum([lines[k] for k in lines])
+    lines["total"] = sum(lines[k] for k in lines)
     return lines
 
 

bluemira/builders/coil_supports.py

@@ -152,7 +152,7 @@ def _get_intersection_wire(self, width):
                 "Boolean cutting returned nothing... check your geometry please."
             )
 
-        return sorted(cut_result, key=lambda wire: wire.length)[0]
+        return min(cut_result, key=lambda wire: wire.length)
 
     def _make_connection_block(self, width, v1, v4, intersection_wire):
         """
@@ -442,9 +442,9 @@ def _get_intersecting_wire(self, v1, v2, v3, v4, angle):
 
         cut_box = make_polygon([v1, v2, v3, v4], closed=True)
 
-        return sorted(
+        return min(
             boolean_cut(self.tf_xz_keep_out_zone, cut_box), key=lambda wire: wire.length
-        )[0]
+        )
 
     def _make_rib_profile(self, support_face):
         # Then, project sideways to find the minimum distance from a support point

bluemira/codes/_freecadapi.py

@@ -498,8 +498,8 @@ def make_ellipse(
     center = Base.Vector(center)
     output = Part.Ellipse(s1, s2, center)
 
-    start_angle = start_angle % 360.0
-    end_angle = end_angle % 360.0
+    start_angle %= 360.0
+    end_angle %= 360.0
 
     if start_angle != end_angle:
         output = Part.ArcOfEllipse(
@@ -1805,7 +1805,7 @@ def boolean_fuse(
         raise ValueError(  # noqa: TRY301
             f"Fuse function still not implemented for {_type} instances."
         )
-    except Exception as e:  # noqa: BLE001
+    except Exception as e:
         raise FreeCADError(str(e)) from e
 
 

bluemira/codes/plasmod/equilibrium_2d_coupling.py

@@ -657,9 +657,9 @@ def calc_curr_dens_profiles(
 
         dum2 = cumulative_trapezoid(B, psi_norm_1D, initial=0)
         dum1 = np.exp(2.0 * dum2)
-        dum1 = dum1 / dum1[-1]
+        dum1 /= dum1[-1]
         dum3 = cumulative_trapezoid(C / dum1, psi_norm_1D, initial=0)
-        dum3 = dum3 - dum3[-1]
+        dum3 -= dum3[-1]
 
         y = dum1 * (dum3 + 0.5 * Fb**2)
         dum2 = g2 / q3

bluemira/display/auto_config.py

@@ -108,8 +108,7 @@ def get_figure_scale_factor(figsize):
     for ds, ss in zip(dpi_size, screen_size, strict=False):
         if ds > ss:
             scale_temp = ss / ds
-            if scale_temp < sf:
-                sf = scale_temp
+            sf = min(scale_temp, sf)
     return sf
 
 

bluemira/equilibria/equilibrium.py

@@ -141,14 +141,14 @@ def _get_eqdsk(
             psi = e.psi
         elif "SCENE" in e.name and not isinstance(cls, Breakdown):
             psi = e.psi
-            e.dxc = e.dxc / 2
-            e.dzc = e.dzc / 2
+            e.dxc /= 2
+            e.dzc /= 2
         elif "fiesta" in e.name.lower():
             psi = e.psi
         else:  # CREATE
             psi = e.psi / (2 * np.pi)  # V.s as opposed to V.s/rad
-            e.dxc = e.dxc / 2
-            e.dzc = e.dzc / 2
+            e.dxc /= 2
+            e.dzc /= 2
             e.cplasma = abs(e.cplasma)
 
         grid = Grid.from_eqdsk(e)

bluemira/equilibria/flux_surfaces.py

@@ -483,7 +483,7 @@ def clip(self, first_wall: Coordinates):
             first_wall.xz.T[fw_arg + 1],
             np.array([self.x_end, self.z_end]),
         ):
-            fw_arg = fw_arg + 1
+            fw_arg += 1
 
         # Relying on the fact that first wall is ccw, get the intersection angle
         self.alpha = get_angle_between_points(

bluemira/equilibria/num_control.py

@@ -113,7 +113,7 @@ def adjust_currents(self, d_current: float):
         """
         Adjust the currents in the virtual control coils.
         """
-        self.current = self.current + d_current
+        self.current += d_current
 
     def stabilise(self):
         """

bluemira/equilibria/optimisation/constraints.py

@@ -114,7 +114,7 @@ def __init__(
             z = np.array([z])
 
         if is_num(B_max):
-            B_max = B_max * np.ones(len(x))
+            B_max *= np.ones(len(x))
         if len(B_max) != len(x):
             raise ValueError(
                 "Maximum field vector length not equal to the number of points."
@@ -123,7 +123,7 @@ def __init__(
         if tolerance is None:
             tolerance = 1e-3 * B_max
         if is_num(tolerance):
-            tolerance = tolerance * np.ones(len(x))
+            tolerance *= np.ones(len(x))
         if len(tolerance) != len(x):
             raise ValueError("Tolerance vector length not equal to the number of coils.")
 
@@ -225,7 +225,7 @@ def __init__(
     ):
         n_coils = coilset.n_coils()
         if is_num(B_max):
-            B_max = B_max * np.ones(n_coils)
+            B_max *= np.ones(n_coils)
         if len(B_max) != n_coils:
             raise ValueError(
                 "Maximum field vector length not equal to the number of coils."
@@ -310,7 +310,7 @@ def __init__(
                     * np.ones(n_f_constraints)
                 )
         if is_num(tolerance):
-            tolerance = tolerance * np.ones(n_f_constraints)
+            tolerance *= np.ones(n_f_constraints)
         elif len(tolerance) != n_f_constraints:
             raise ValueError(f"Tolerance vector not of length {n_f_constraints}")
 
@@ -394,9 +394,9 @@ def __init__(
             tolerance = 1e-3 if target_value == 0 else 1e-3 * target_value
         if is_num(tolerance):
             if f_constraint == L2NormConstraint:
-                tolerance = tolerance * np.ones(1)
+                tolerance *= np.ones(1)
             else:
-                tolerance = tolerance * np.ones(len(self))
+                tolerance *= np.ones(len(self))
         self.weights = weights
         self._f_constraint = f_constraint
         self._args = {"a_mat": None, "b_vec": None, "value": 0.0, "scale": 1.0}
@@ -726,7 +726,7 @@ def plot(self, ax):
         ax.plot(self.x, self.z, **kwargs)
 
 
-class MagneticConstraintSet(ABC):
+class MagneticConstraintSet:
     """
     A set of magnetic constraints to be applied to an equilibrium. The optimisation
     problem is of the form:
@@ -791,7 +791,7 @@ def __len__(self) -> int:
         """
         The mathematical size of the constraint set.
         """
-        return sum([len(c) for c in self.constraints])
+        return sum(len(c) for c in self.constraints)
 
     def get_weighted_arrays(self) -> tuple[np.ndarray, np.ndarray, np.ndarray]:
         """

bluemira/equilibria/optimisation/harmonics/harmonics_approx_functions.py

@@ -400,7 +400,7 @@ def lcfs_fit_metric(coords1: Coordinates, coords2: Coordinates) -> float:
     result2 = boolean_cut(c2_face, c1_face)
 
     #  Calculate metric
-    return (sum([f.area for f in result1]) + sum([f.area for f in result2])) / (
+    return (sum(f.area for f in result1) + sum(f.area for f in result2)) / (
         c1_face.area + c2_face.area
     )
 

bluemira/equilibria/optimisation/harmonics/harmonics_constraints.py

@@ -64,7 +64,7 @@ def __init__(
             ord_mag = np.floor(np.log10(np.absolute(ref_harmonics))) - 3
             tolerance = [max(smallest_tol, 10**x) for x in ord_mag]
         elif is_num(tolerance):
-            tolerance = tolerance * np.ones(len(ref_harmonics))
+            tolerance *= np.ones(len(ref_harmonics))
         elif len(tolerance) != len(ref_harmonics):
             raise ValueError(f"Tolerance vector not of length {len(ref_harmonics)}")
 

bluemira/equilibria/optimisation/objectives.py

@@ -84,7 +84,7 @@ def __init__(
 
     def f_objective(self, vector: npt.NDArray[np.float64]) -> float:
         """Objective function for an optimisation."""
-        vector = vector * self.scale
+        vector = vector * self.scale  # nlopt read only  # noqa: PLR6104
         fom, _ = regularised_lsq_fom(vector, self.a_mat, self.b_vec, self.gamma)
         if fom <= 0:
             raise EquilibriaError(
@@ -94,7 +94,7 @@ def f_objective(self, vector: npt.NDArray[np.float64]) -> float:
 
     def df_objective(self, vector: npt.NDArray[np.float64]) -> npt.NDArray[np.float64]:
         """Gradient of the objective function for an optimisation."""
-        vector = vector * self.scale
+        vector = vector * self.scale  # nlopt read only  # noqa: PLR6104
         jac = 2 * self.a_mat.T @ self.a_mat @ vector / float(len(self.b_vec))
         jac -= 2 * self.a_mat.T @ self.b_vec / float(len(self.b_vec))
         jac += 2 * self.gamma * self.gamma * vector

bluemira/fuel_cycle/timeline.py

@@ -376,7 +376,7 @@ def concatenate(p_phases, k_key):
 
         for key in ["t", "inventory", "DT_rate", "DD_rate"]:
             setattr(self, key, concatenate(phases, key))
-        self.t_unplanned_m = sum([p.t_unplanned_down for p in phases])
+        self.t_unplanned_m = sum(p.t_unplanned_down for p in phases)
         t = [p.t for p in phases]
         lens = np.array([len(i) for i in t])
         self.mci = np.cumsum(lens)

bluemira/fuel_cycle/tools.py

@@ -397,7 +397,7 @@ def find_max_load_factor(time_years: np.ndarray, time_fpy: np.ndarray) -> float:
     """
     _t, rt = discretise_1d(time_years, time_fpy, int(np.ceil(time_years[-1])))
     try:
-        a = max([x - x1 for x1, x in pairwise(rt)])
+        a = max(x - x1 for x1, x in pairwise(rt))
     except ValueError:
         # Shortened time overflow error (only happens when debugging)
         a = 1
@@ -621,9 +621,8 @@ def _fountain_linear_sink(
 
                 inventory = min_inventory
                 topup = min_inventory * (1 - np.exp(-T_LAMBDA * (t_out - t_in - t15)))
-                m_out_temp = mass_in - m_in * t15 - topup
-                m_out_temp = max(m_out_temp, 0)
-                m_out = m_out_temp / dts  # spread evenly over timestep
+                # spread evenly over timestep
+                m_out = max(mass_in - m_in * t15 - topup, 0) / dts
             elif i_mdot2 >= max_inventory:
                 # Case (unlikely) where massive overshoot occurs
                 # TODO: Handle properly
@@ -634,9 +633,9 @@ def _fountain_linear_sink(
                 topup = max_inventory * (
                     1 - np.exp(-T_LAMBDA * (t_out - t_in - t175 - t15))
                 )
-                m_out_temp = mass_in - topup - m_in * t15 - (1 - fs) * m_in * t175
-                m_out_temp = max(m_out_temp, 0)
-                m_out = m_out_temp / dts
+                m_out = (
+                    max(mass_in - topup - m_in * t15 - (1 - fs) * m_in * t175, 0) / dts
+                )
             else:
                 # Case where successfully crosses up
                 dt2 = t_out - t_in - t15
@@ -662,10 +661,8 @@ def _fountain_linear_sink(
 
                 inventory = min_inventory
                 topup = min_inventory * (1 - np.exp(-T_LAMBDA * (t_out - t_in - t15)))
-                m_out_temp = mass_in - m_in * t15 - topup
-                if m_out_temp < 0:
-                    m_out_temp = 0
-                m_out = m_out_temp / dts  # spread evenly over timestep
+                # spread evenly over timestep
+                m_out = max(mass_in - m_in * t15 - topup, 0) / dts
 
         elif i_mdot >= max_inventory:
             t15 = _find_t15(inventory, 1 - fs, m_in, t_in, t_out, max_inventory)

bluemira/gen_params.py

@@ -199,8 +199,7 @@ def main():
         for vv in param_classes.values():
             add_to_dict(vv, output, params)
 
-        with open(Path(args.directory, "params.py"), "w") as fh:
-            fh.write(create_parameterframe(params))
+        Path(args.directory, "params.py").write_text(create_parameterframe(params))
         json_writer(output, file=Path(args.directory, "params.json"))
 
     else:

bluemira/geometry/parameterisations.py

@@ -1272,7 +1272,7 @@ def create_shape(self, label: str = "") -> BluemiraWire:
         l_end = variables[15:]
 
         tilt = np.deg2rad(tilt)
-        height = 0.5 * height
+        height *= 0.5
         ds_z = flat * height * np.cos(tilt)
         ds_x = flat * height * np.sin(tilt)
 

bluemira/geometry/plane.py

@@ -117,7 +117,7 @@ def axis(self, value: Iterable[float]):
 
     def move(self, vector: Iterable[float]):
         """Moves the Plane along the given vector"""
-        self.base = self.base + np.array(vector)
+        self.base += np.array(vector)
 
     def __repr__(self) -> str:
         """

bluemira/geometry/tools.py

@@ -1391,9 +1391,7 @@ def _signed_distance_2D(point: np.ndarray, polygon: np.ndarray) -> float:
         e = polygon[j] - polygon[i]
         w = point - polygon[i]
         b = w - e * _nb_clip(_nb_dot_2D(w, e) / _nb_dot_2D(e, e), 0.0, 1.0)
-        d_new = _nb_dot_2D(b, b)
-        if d_new < d:
-            d = d_new
+        d = min(_nb_dot_2D(b, b), d)
 
         cond = np.array([
             point[1] >= polygon[i][1],

bluemira/magnetostatics/baseclass.py

@@ -136,9 +136,9 @@ def rotate(self, angle: float, axis: np.ndarray | str):
             The axis of rotation
         """
         r = rotation_matrix(np.deg2rad(angle), axis).T
-        self._origin = self._origin @ r
+        self._origin @= r
         self._points = np.array([p @ r for p in self._points], dtype=object)
-        self._dcm = self._dcm @ r
+        self._dcm @= r
 
     def _local_to_global(
         self, points: npt.NDArray[np.float64]
@@ -315,7 +315,7 @@ def rotate(self, angle: float, axis: np.ndarray | str):
         """
         for source in self.sources:
             source.rotate(angle, axis)
-        self._points = self._points @ rotation_matrix(angle, axis)
+        self._points @= rotation_matrix(angle, axis)
 
     def plot(self, ax: Axes | None = None, *, show_coord_sys: bool = False):
         """

bluemira/magnetostatics/biot_savart.py

@@ -238,11 +238,11 @@ def rotate(self, angle: float, axis: str | np.ndarray):
             The axis of rotation
         """
         r = rotation_matrix(np.deg2rad(angle), axis).T
-        self._points = self._points @ r
-        self._d_l = self._d_l @ r
-        self._mid_points = self._mid_points @ r
-        self.ref_d_l = self.ref_d_l @ r
-        self.ref_mid_points = self.ref_mid_points @ r
+        self._points @= r
+        self._d_l @= r
+        self._mid_points @= r
+        self.ref_d_l @= r
+        self.ref_mid_points @= r
         self._arrays = [array @ r for array in self._arrays]
 
     def plot(self, ax: Axes | None = None, *, show_coord_sys: bool = False):

bluemira/magnetostatics/semianalytic_2d.py

@@ -81,7 +81,7 @@ def _partial_z_integrand_nojit(phi: float, rr: float, zz: float) -> float:
     result = result - 0.5 * rr if rr - 1 < EPS else result - 0.5 / rr
     # F3
     if 0.5 * np.pi * sin_phi > 1e-9:  # noqa: PLR2004
-        result = result - sin_phi * np.arctan(zz * (rr - cos_phi) / (r0 * sin_phi))
+        result -= sin_phi * np.arctan(zz * (rr - cos_phi) / (r0 * sin_phi))
     return result
 
 
@@ -127,7 +127,7 @@ def _get_working_coords(
     """
     Convert coil and global coordinates to working coordinates.
     """
-    z = z - zc
+    z = z - zc  # numba issue # noqa: PLR6104
     r1, r2 = (xc - d_xc) / x, (xc + d_xc) / x
     z1, z2 = (-d_zc - z) / x, (d_zc - z) / x
     j_tor = 1 / (4 * d_xc * d_zc)  # Keep current out of the equation
@@ -293,7 +293,7 @@ def _full_psi_integrand(x, phi, xc, zc, z, d_xc, d_zc):
     """
     Integrand for psi = xBz
     """
-    z = z - zc
+    z = z - zc  # numba issue # noqa: PLR6104
     r1, r2 = (xc - d_xc) / x, (xc + d_xc) / x
     z1, z2 = (-d_zc - z) / x, (d_zc - z) / x
     return x**2 * (