feat: Implement EDFM loading from VTK

[ouassimkh]

Implement EDFM loading and tested it on a simple 2.5D EDFM case. Below is an input example containing 2 fracture elements:

• fracture_ids_points: represent all the fracture patch point ids including shared points (no duplicates).
• fracture_to_paren_matrix_cell_mapping: maps each edfm fracture element to matrix element.
• permeability : fracture elements permeability (loaded but not used yet, we continue to use constant fracture props provided with CompressibleSolidParallelPlatesPermeability)
• aperture: is fracture aperture
• tangential_width_vectors, tangential_length_vectors and normal_vectors are the 3 principal vectors of a fracture patch plan.
• connectivity: each patch is represented by a 4 points (quad).

<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="0.1" byte_order="LittleEndian" header_type="UInt32" compressor="vtkZLibDataCompressor">
  <UnstructuredGrid>
    <Piece NumberOfPoints="6" NumberOfCells="2">
      <PointData>
        <DataArray type="Int32" Name="fracture_ids_points" NumberOfComponents="1" format="ascii">
         0
         1
         2
         3
         4
         5
        </DataArray>
      </PointData>
      <CellData>
        <DataArray type="Int32" Name="fracture_to_parent_matrix_cell_mapping" NumberOfComponents="2" format="ascii">
         0 4
         1 13
        </DataArray>
        <DataArray type="Float32" Name="permeability" NumberOfComponents="1" format="ascii" RangeMin="0.1" RangeMax="0.1">
          0.1
          0.1
        </DataArray>
        <DataArray type="Float32" Name="aperture" NumberOfComponents="1" format="ascii" RangeMin="0.0001" RangeMax="0.0001">
          0.0001
          0.0001
        </DataArray>
        <DataArray type="Float32" Name="tangential_width_vectors" NumberOfComponents="3" format="ascii">
          0 0 1
          0 0 1
        </DataArray>
        <DataArray type="Float32" Name="tangential_length_vectors" NumberOfComponents="3" format="ascii">
          0 1 0
          0 1 0
        </DataArray>
        <DataArray type="Float32" Name="normal_vectors" NumberOfComponents="3" format="ascii">
          1 0 0
          1 0 0
        </DataArray>
      </CellData>
      <Points>
        <DataArray type="Float32" Name="Points" NumberOfComponents="3" format="ascii" RangeMin="0" RangeMax="1">
          0.5 0.3333 0
          0.5 0.6666 0
          0.5 0.3333 0.5
          0.5 0.6666 0.5
          0.5 0.3333 1
          0.5 0.6666 1
          <InformationKey name="L2_NORM_RANGE" location="vtkDataArray" length="2">
            <Value index="0">
              0
            </Value>
            <Value index="1">
              1
            </Value>
          </InformationKey>
        </DataArray>
      </Points>
      <Cells>
        <DataArray type="Int64" Name="connectivity" format="ascii" RangeMin="0" RangeMax="5">
        1 0 2 3
        3 2 4 5
        </DataArray>
        <DataArray type="Int64" Name="offsets" format="ascii" RangeMin="4" RangeMax="8">
          4
          8
        </DataArray>
        <DataArray type="UInt8" Name="types" format="ascii" RangeMin="9" RangeMax="9">
          9
          9
        </DataArray>
      </Cells>
    </Piece>
  </UnstructuredGrid>
</VTKFile>

[ouassimkh]

Just wondering why was the branch closed? is it merged ?

[MelReyCG]

Sorry to have closed it, it was not intended at all!

[MelReyCG]

Hi Pavel,
I just looked at this PR to see what It was about, and I got some issues because of letter case confusion in the branches names on this PR (origin/Feature/... by @ouassimkh and origin/feature/... by @paveltomin if I remember correctly), my goal was to remove the older branch by @ouassimkh.
Sorry for the troubles, closing the PR was not my intention.

[paveltomin]

i added global to local mappings to fix the parallel run
still needs to be tested for more complex cases
removed "serial only" from the title