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Update README.md
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matamadio authored Oct 31, 2023
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48 changes: 34 additions & 14 deletions Top-down/parallelization/README.md
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# SETUP
We strongly recommend using the mamba package manager.

## Using MAMBA
## Using MAMBA (WINDOWS)

Environment creation:

```bash
$ mamba create -n CCDR-tools --file Top-down/notebooks/win_env.yml
$ mamba create -n CCDR-tools --file Top-down/parallelization/win_env.yml
```

Updating the environment spec (e.g., if package version changed or a package is added/removed):

```bash
$ mamba list -n CCDR-tools --explicit > win_env.yml
```

Updating the environment (e.g., after code updates)

```bash
$ mamba update -n CCDR-tools --file Top-down/notebooks/win_env.yml
$ mamba update -n CCDR-tools --file Top-down/parallelization/win_env.yml
```

## Using CONDA
## Using MAMBA (LINUX)

Environment creation:

```bash
$ conda create -name CCDR-tools --file Top-down/notebooks/win_env.yml
$ mamba create -n CCDR-tools --file Top-down/parallelization/linux_env.yml
```
Updating the environment spec:
```bash
$ mamba list -n CCDR-tools --explicit > linux_env.yml
```

Updating the environment (e.g., after code updates)

```bash
$ conda update -name CCDR-tools --file Top-down/notebooks/win_env.yml
$ mamba update -n CCDR-tools --file Top-down/parallelization/linux_env.yml
```

## Using CONDA (WINDOWS)

Environment creation:
```bash
$ conda create -name CCDR-tools --file Top-down/parallelization/win_env.yml
```
Updating the environment (e.g., after code updates)
```bash
$ conda update -name CCDR-tools --file Top-down/parallelization/win_env.yml
```
Activate the environment (e.g., after code updates)
```bash
$ activate CCDR-tools
```

## Using CONDA (LINUX)

Environment creation:
```bash
$ conda create -name CCDR-tools --file Top-down/parallelization/linux_env.yml
```
Updating the environment (e.g., after code updates)
```bash
$ conda update -name CCDR-tools --file Top-down/parallelization/linux_env.yml
```
Activate the environment (e.g., after code updates)
```bash
$ activate CCDR-tools
```
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