Add pybufrkit

[mathomp4]

This PR adds pybufrkit (https://pybufrkit.readthedocs.io/en/latest/) to GEOSpyD. It enables reading and processing of BUFR files.

[coderabbitai]

Walkthrough

The latest update, version 24.1.2, released on April 9, 2024, enriches the project by integrating the pybufrkit package. This addition is aimed at enhancing the project's capabilities by leveraging pybufrkit's functionalities. The update includes modifications in the package installation process, specifically through the install_miniconda.bash script, ensuring pybufrkit is seamlessly incorporated into the environment.

Changes

Files	Change Summary
CHANGELOG.md	Added pybufrkit package under Explicit Pip Packages.
install_miniconda.bash	Included installation of pybufrkit via $PIP_INSTALL.

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Recent Review Status

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Commits

Files that changed from the base of the PR and between 7de5a14 and fc20547.

Files selected for processing (2)

• CHANGELOG.md (2 hunks)
• install_miniconda.bash (1 hunks)

Additional comments not posted (2)

CHANGELOG.md (1)

17-23: > 📝 NOTE

This review was outside the diff hunks and was mapped to the diff hunk with the greatest overlap. Original lines [20-41]

Consider adding a brief description of pybufrkit under the Added section for Explicit Pip Packages to provide context on its significance and usage within GEOSpyD.

install_miniconda.bash (1)

624-624: The addition of pybufrkit using $PIP_INSTALL is correctly implemented. This aligns with the PR's objective to enhance GEOSpyD's functionality by integrating the ability to read and process BUFR files.

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Actionable comments posted: 0

Actionable comments outside the diff hunks (4)

install_miniconda.bash (4)

Line range hint 38-38: Consider removing or commenting out the NODE variable if it's not being used in the script to improve clarity.

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Line range hint 286-286: Ensure all variable expansions are double-quoted to prevent globbing and word splitting. This is a common best practice in bash scripting to avoid unexpected behavior.

- if [ ! -d $MINICONDA_DIR ]
+ if [ ! -d "$MINICONDA_DIR" ]

Repeat this pattern for all instances where variables are used without double quotes.

Also applies to: 287-287, 288-288, 354-354, 386-386, 391-391, 413-413, 425-425, 434-434, 443-443, 454-454, 467-467, 496-496, 508-508, 589-589, 605-605, 643-643, 648-648, 657-657, 660-660, 662-662, 664-664, 668-668, 670-670, 674-674, 679-679, 683-683, 692-692

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Line range hint 425-425: Use "$@" instead of $* to correctly handle arguments with spaces. This ensures that each argument is treated as a separate word.

- echo $*
+ echo "$@"

Also applies to: 434-434, 443-443

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Line range hint 657-657: To prevent potential directory traversal issues, ensure that variables used in paths are not empty or unset. This can be achieved by using the ${var:?} syntax.

- cd $MINICONDA_INSTALLDIR/bin
+ cd "${MINICONDA_INSTALLDIR:?}/bin"