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Allow user to edit region size as 'Custom zoom' (#4789)
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47 changes: 47 additions & 0 deletions
47
plugins/linear-genome-view/src/LinearGenomeView/components/HeaderPanControls.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| import ArrowBackIcon from '@mui/icons-material/ArrowBack' | ||
| import ArrowForwardIcon from '@mui/icons-material/ArrowForward' | ||
| import { Button, alpha } from '@mui/material' | ||
| import { makeStyles } from 'tss-react/mui' | ||
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| import { SPACING } from '../consts' | ||
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| import type { LinearGenomeViewModel } from '..' | ||
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| type LGV = LinearGenomeViewModel | ||
| const useStyles = makeStyles()(theme => ({ | ||
| panButton: { | ||
| background: alpha(theme.palette.background.paper, 0.8), | ||
| color: theme.palette.text.primary, | ||
| margin: SPACING, | ||
| }, | ||
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| buttonSpacer: { | ||
| marginRight: theme.spacing(2), | ||
| }, | ||
| })) | ||
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| export default function HeaderPanControls({ model }: { model: LGV }) { | ||
| const { classes } = useStyles() | ||
| return ( | ||
| <> | ||
| <Button | ||
| variant="outlined" | ||
| className={classes.panButton} | ||
| onClick={() => { | ||
| model.slide(-0.9) | ||
| }} | ||
| > | ||
| <ArrowBackIcon /> | ||
| </Button> | ||
| <Button | ||
| variant="outlined" | ||
| className={classes.panButton} | ||
| onClick={() => { | ||
| model.slide(0.9) | ||
| }} | ||
| > | ||
| <ArrowForwardIcon /> | ||
| </Button> | ||
| </> | ||
| ) | ||
| } |
31 changes: 31 additions & 0 deletions
31
plugins/linear-genome-view/src/LinearGenomeView/components/HeaderRegionWidth.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| import { getBpDisplayStr } from '@jbrowse/core/util' | ||
| import { Typography } from '@mui/material' | ||
| import { observer } from 'mobx-react' | ||
| import { makeStyles } from 'tss-react/mui' | ||
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| import type { LinearGenomeViewModel } from '..' | ||
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| const useStyles = makeStyles()({ | ||
| bp: { | ||
| display: 'flex', | ||
| alignItems: 'center', | ||
| marginLeft: 5, | ||
| cursor: 'pointer', | ||
| }, | ||
| }) | ||
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| const HeaderRegionWidth = observer(function ({ | ||
| model, | ||
| }: { | ||
| model: LinearGenomeViewModel | ||
| }) { | ||
| const { classes } = useStyles() | ||
| const { coarseTotalBp } = model | ||
| return ( | ||
| <Typography variant="body2" color="textSecondary" className={classes.bp}> | ||
| {getBpDisplayStr(coarseTotalBp)} | ||
| </Typography> | ||
| ) | ||
| }) | ||
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| export default HeaderRegionWidth |
34 changes: 34 additions & 0 deletions
34
plugins/linear-genome-view/src/LinearGenomeView/components/HeaderTrackSelectorButton.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons' | ||
| import { IconButton } from '@mui/material' | ||
| import { observer } from 'mobx-react' | ||
| import { makeStyles } from 'tss-react/mui' | ||
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| import type { LinearGenomeViewModel } from '..' | ||
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| const useStyles = makeStyles()(theme => ({ | ||
| toggleButton: { | ||
| height: 44, | ||
| border: 'none', | ||
| marginLeft: theme.spacing(4), | ||
| }, | ||
| })) | ||
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| const HeaderTrackSelectorButton = observer(function ({ | ||
| model, | ||
| }: { | ||
| model: LinearGenomeViewModel | ||
| }) { | ||
| const { classes } = useStyles() | ||
| return ( | ||
| <IconButton | ||
| onClick={model.activateTrackSelector} | ||
| className={classes.toggleButton} | ||
| title="Open track selector" | ||
| value="track_select" | ||
| > | ||
| <TrackSelectorIcon /> | ||
| </IconButton> | ||
| ) | ||
| }) | ||
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| export default HeaderTrackSelectorButton |
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78 changes: 78 additions & 0 deletions
78
plugins/linear-genome-view/src/LinearGenomeView/components/RegionWidthEditorDialog.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,78 @@ | ||
| import { useEffect, useState } from 'react' | ||
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| import { Dialog } from '@jbrowse/core/ui' | ||
| import { toLocale } from '@jbrowse/core/util' | ||
| import { | ||
| Button, | ||
| DialogActions, | ||
| DialogContent, | ||
| TextField, | ||
| Typography, | ||
| } from '@mui/material' | ||
| import { observer } from 'mobx-react' | ||
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| import type { LinearGenomeViewModel } from '../model' | ||
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| const toP = (s = 0) => +(+s).toFixed(1) | ||
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| const RegionWidthEditorDialog = observer(function ({ | ||
| model, | ||
| handleClose, | ||
| }: { | ||
| model: LinearGenomeViewModel | ||
| handleClose: () => void | ||
| }) { | ||
| const { bpPerPx, width } = model | ||
| const [val, setVal] = useState(toLocale(toP(bpPerPx * width))) | ||
| useEffect(() => { | ||
| setVal(toLocale(bpPerPx * width)) | ||
| }, [bpPerPx, width]) | ||
| const val2 = val.replace(/,/g, '') | ||
| return ( | ||
| <Dialog title="Edit zoom level" open onClose={handleClose}> | ||
| <DialogContent | ||
| style={{ | ||
| display: 'flex', | ||
| flexDirection: 'column', | ||
| gap: 30, | ||
| }} | ||
| > | ||
| <Typography> | ||
| Enter a specific number of base pairs to change the viewport to show. | ||
| This is approximate and does not account for padding between regions | ||
| or off-screen scrolling | ||
| </Typography> | ||
| <TextField | ||
| helperText="current zoom level (in bp)" | ||
| value={val} | ||
| onChange={event => { | ||
| setVal(event.target.value) | ||
| }} | ||
| /> | ||
| </DialogContent> | ||
| <DialogActions> | ||
| <Button | ||
| variant="contained" | ||
| color="secondary" | ||
| onClick={() => { | ||
| handleClose() | ||
| }} | ||
| > | ||
| Cancel | ||
| </Button> | ||
| <Button | ||
| variant="contained" | ||
| color="primary" | ||
| onClick={() => { | ||
| model.zoomTo(+val2 / model.width) | ||
| handleClose() | ||
| }} | ||
| > | ||
| Submit | ||
| </Button> | ||
| </DialogActions> | ||
| </Dialog> | ||
| ) | ||
| }) | ||
|
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| export default RegionWidthEditorDialog |
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