v3.0.0 release announcement

[cmdcolin]

Unreleased (2025-01-29)

💥 Breaking Change

• core
  • #4716 Update to generic-filehandle2 (@cmdcolin)
• __mocks__, app-core, core, embedded-core, product-core, sv-core
  • #4702 Update to react 19 (@cmdcolin)

🚀 Enhancement

• core, web-core
  • #4799 Add genotype to multi-variant mouseover (@cmdcolin)
• core, product-core
  • #4798 Add more track metadata to UCSC assembly hub loading (@cmdcolin)
• Other
  • #4796 Make any bigType track open as BigBedAdapter in ucsc connections (@cmdcolin)
  • #4782 Add track filetype guesser for BedGraph (@cmdcolin)
  • #4774 Restore concept of linking synteny views (@cmdcolin)
  • #4770 Add turbo-zoom buttons (@cmdcolin)
  • #4756 Improved mouseover on alignment squiggles in breakpoint split view (@cmdcolin)
  • #4736 Bulk delete session tracks (@cmdcolin)
  • #4733 Add option to 'Hide small indels (<10bp)' (@cmdcolin)
• core
  • #4795 Improved rendering of phased VCF and polyploid VCF in multi-variant view (@cmdcolin)
  • #4792 Allow uploading a sampleTsv file with per-sample metadata for VCF files (@cmdcolin)
  • #4786 Allow opening "synteny tracks" from the default Add track workflow (@cmdcolin)
  • #4785 Allow opening BedGraph et al in the default Add track workflow (@cmdcolin)
  • #4784 Improve UI for choosing query and target assemblies in the "New track" workflow for synteny tracks (@cmdcolin)
  • #4767 Improve load time when multiple tracks use same data file (@cmdcolin)
  • #4750 Add some more lazy loading for smaller bundle size (@cmdcolin)
• sv-core
  • #4753 Allow launching a single level breakpoint split view focused on the breakends (@cmdcolin)
• web-core
  • #4745 Add ability to load a ?hubURL= from URL bar (@cmdcolin)
• app-core, core
  • #4729 Update cram-js to avoid requesting file size for more CORS compatibility (@cmdcolin)

🐛 Bug Fix

• Other
  • #4778 Fix GC content calculation consistency across blocks (@cmdcolin)
  • #4773 Fix "Color by CDS" for BED12 features (@cmdcolin)
  • #4771 Fix generating categories for composite tracks in UCSC hubs (@cmdcolin)
  • #4769 Fix facet filter crash (@cmdcolin)
  • #4765 Fix repeat masker track BED interpretation (@cmdcolin)
  • #4764 Fix modifications coverage calculations (@cmdcolin)
  • #4731 Fix naming of subtracks produced by "group by tag" operation (@cmdcolin)
  • #4732 Fix persisting alignments "color by" and "filter by" settings in snapshots/session shares/page reloads (@cmdcolin)
• core
  • #4776 Fix maximum recursion error in linear synteny view import form (@cmdcolin)
  • #4768 Fix navigation via CIGAR string alignment in synteny view (@cmdcolin)
  • #4766 Fix some bed12 transcripts displaying as bedMethyl features (@cmdcolin)
  • #4727 Fix type confusion where sequence feature details crashes for empty subfeatures (@cmdcolin)
  • #4725 Avoid error on closing draggable dialog and a couple more refactors (@cmdcolin)

🏠 Internal

• Other
  • #4791 Fix storybook vcf failing to load in dev server (@cmdcolin)
• core
  • #4777 Remove margin:'dense' in default theme (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• Kim Rutherford (@kimrutherford)
  Done in 2.65s.

[cmdcolin]

woops, this is a duplicate of https://github.com/GMOD/jbrowse-components/pull/4728/files

arguably better release blogpost though, so close the other

[cmdcolin]

[cmdcolin]

[cmdcolin]

[cmdcolin]