Merge pull request #98 from wbszhu/master

fix bug in issue #97

.github/workflows/python-package-conda.yml

@@ -11,10 +11,13 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.7
+    - name: Set up Python 3.9
       uses: actions/setup-python@v2
       with:
-        python-version: 3.7
+        python-version: 3.9
+    - name: Update Conda
+      run: |
+        $CONDA/bin/conda update -n base -c defaults conda --yes
     - name: Install dependencies
       run: |
         sudo apt install libcurl4-openssl-dev

coolbox/core/track/arcs/plot.py

@@ -103,8 +103,12 @@ def get_color(score, min_score, max_score):
             center = (start + end) / 2
             ax.plot([center], [diameter])
             arc = Arc(
-                (center, 0), diameter,
-                height, 0, 0, 180,
+                xy=(center, 0), 
+                width=diameter,
+                height=height, 
+                angle=0, 
+                theta1=0, 
+                theta2=180,
                 color=color,
                 alpha=alpha,
                 lw=line_width,

environment.yml

@@ -13,4 +13,4 @@ dependencies:
   - samtools>=1.10
   - libcurl
   - pip:
-    - -r file:requirements.txt
+    - -r requirements.txt

requirements.txt

@@ -2,7 +2,7 @@ scipy>=1.0.0
 numpy
 pandas>=1.0.0
 statsmodels
-matplotlib>=3.4.1
+matplotlib>=3.8.4
 jupyter>=1.0.0
 ipywidgets>=7.5.1
 nbformat