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update readme
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Nanguage committed Sep 29, 2020
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Expand Up @@ -23,3 +23,17 @@ $ cd scTools; cargo build --release
1. Copy `main.nf` and `nextflow.config` to your working path.
2. Modify `nextflow.config`.
3. Run `nextflow run main.nf`.

## Result

Result file of each steps will stored in the `result` folder in the working path.

| sub folder | description |
| -----------| ------------|
| pairs_cell | pairs of each cell |
| pairs_lib | pairs of each library |
| pairs_all | merged pairs |
| dot_hic_cell | .hic file of each cell |
| dot_hic_lib | .hic file of each library |
| dot_hic_all | .hic file of all merged reads |
| tmp | intermediate files of each steps |

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