Remove MetaQCD dependency from MetaAnalysis

MetaAnalysis/Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.9.4"
 manifest_format = "2.0"
-project_hash = "52d32651f5e8ac50e127be1c29e8d37f69076bb6"
+project_hash = "a6fc9a10583fd9ec38f222cfde71d008eafad88c"
 
 [[deps.ADerrors]]
 deps = ["BDIO", "FFTW", "FastGaussQuadrature", "ForwardDiff", "LaTeXStrings", "LinearAlgebra", "Nettle", "PGFPlotsX", "Plots", "Printf", "QuadGK", "Roots", "Statistics", "Test", "UnicodePlots"]
@@ -64,24 +64,12 @@ weakdeps = ["StaticArrays"]
     [deps.Adapt.extensions]
     AdaptStaticArraysExt = "StaticArrays"
 
-[[deps.AlgRemez_jll]]
-deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "MPFR_jll", "Pkg"]
-git-tree-sha1 = "491f3c8c89a7aa6f89c76642032e1eebf8f1cd8a"
-uuid = "acb6dc63-88f0-54c7-a126-ccdc963b8b3f"
-version = "0.1.1+0"
-
 [[deps.AliasTables]]
 deps = ["PtrArrays", "Random"]
 git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff"
 uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
 version = "1.1.3"
 
-[[deps.Aqua]]
-deps = ["Compat", "Pkg", "Test"]
-git-tree-sha1 = "76c782a88d7e685c2d7413da0a2197b649278852"
-uuid = "4c88cf16-eb10-579e-8560-4a9242c79595"
-version = "0.6.7"
-
 [[deps.ArgCheck]]
 git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4"
 uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197"
@@ -91,12 +79,6 @@ version = "2.3.0"
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 version = "1.1.1"
 
-[[deps.ArnoldiMethod]]
-deps = ["LinearAlgebra", "Random", "StaticArrays"]
-git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6"
-uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
-version = "0.4.0"
-
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
 git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75"
@@ -122,12 +104,6 @@ version = "7.7.1"
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 
-[[deps.Atomix]]
-deps = ["UnsafeAtomics"]
-git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be"
-uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458"
-version = "0.1.0"
-
 [[deps.BDIO]]
 deps = ["Documenter", "Nettle", "Test"]
 git-tree-sha1 = "45f43efe91dcda1939cfa5b0b028ea941afdc367"
@@ -162,11 +138,6 @@ git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
 uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
 version = "1.0.8+1"
 
-[[deps.CEnum]]
-git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
-uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
-version = "0.5.0"
-
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
 git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec"
@@ -423,11 +394,6 @@ git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
 version = "2.6.2+0"
 
-[[deps.ExprTools]]
-git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
-uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
-version = "0.1.10"
-
 [[deps.FFMPEG]]
 deps = ["BinaryProvider", "Libdl"]
 git-tree-sha1 = "9143266ba77d3313a4cf61d8333a1970e8c5d8b6"
@@ -458,12 +424,6 @@ git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92"
 uuid = "442a2c76-b920-505d-bb47-c5924d526838"
 version = "1.0.2"
 
-[[deps.FileIO]]
-deps = ["Pkg", "Requires", "UUIDs"]
-git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322"
-uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-version = "1.16.3"
-
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
@@ -614,12 +574,6 @@ git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293"
 uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0"
 version = "0.1.17"
 
-[[deps.Hwloc_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1d334207121865ac8c1c97eb7f42d0339e4635bf"
-uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8"
-version = "2.11.0+0"
-
 [[deps.HypergeometricFunctions]]
 deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"]
 git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685"
@@ -667,12 +621,6 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
-[[deps.JLD2]]
-deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"]
-git-tree-sha1 = "84642bc18a79d715b39d3724b03cbdd2e7d48c62"
-uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.49"
-
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
 git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af"
@@ -697,18 +645,6 @@ git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
 version = "3.0.3+0"
 
-[[deps.KernelAbstractions]]
-deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec"
-uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
-version = "0.9.22"
-
-    [deps.KernelAbstractions.extensions]
-    EnzymeExt = "EnzymeCore"
-
-    [deps.KernelAbstractions.weakdeps]
-    EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
-
 [[deps.LAME_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd"
@@ -721,24 +657,6 @@ git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434"
 uuid = "88015f11-f218-50d7-93a8-a6af411a945d"
 version = "3.0.0+1"
 
-[[deps.LLVM]]
-deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
-git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c"
-uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "8.0.0"
-
-    [deps.LLVM.extensions]
-    BFloat16sExt = "BFloat16s"
-
-    [deps.LLVM.weakdeps]
-    BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b"
-
-[[deps.LLVMExtra_jll]]
-deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e"
-uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.30+0"
-
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713"
@@ -907,43 +825,6 @@ git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
 version = "2024.1.0+0"
 
-[[deps.MPFR_jll]]
-deps = ["Artifacts", "GMP_jll", "Libdl"]
-uuid = "3a97d323-0669-5f0c-9066-3539efd106a3"
-version = "4.1.1+4"
-
-[[deps.MPI]]
-deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"]
-git-tree-sha1 = "b4d8707e42b693720b54f0b3434abee6dd4d947a"
-uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-version = "0.20.16"
-
-    [deps.MPI.extensions]
-    AMDGPUExt = "AMDGPU"
-    CUDAExt = "CUDA"
-
-    [deps.MPI.weakdeps]
-    AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
-    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
-
-[[deps.MPICH_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7"
-uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
-version = "4.2.1+1"
-
-[[deps.MPIPreferences]]
-deps = ["Libdl", "Preferences"]
-git-tree-sha1 = "c105fe467859e7f6e9a852cb15cb4301126fac07"
-uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267"
-version = "0.1.11"
-
-[[deps.MPItrampoline_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0"
-uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748"
-version = "5.4.0+0"
-
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
 git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
@@ -987,28 +868,6 @@ git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
 uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
 version = "0.3.2"
 
-[[deps.MetaQCD]]
-deps = ["Accessors", "AlgRemez_jll", "Aqua", "ArnoldiMethod", "Dates", "DelimitedFiles", "InteractiveUtils", "JLD2", "KernelAbstractions", "LinearAlgebra", "LoopVectorization", "MPI", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Printf", "Random", "RecipesBase", "Requires", "SparseArrays", "StaticArrays", "Statistics", "StrideArraysCore", "TOML", "TimerOutputs", "Unicode"]
-git-tree-sha1 = "af83add4c24b93d4e5e8bc09c86ccc730c9083bf"
-repo-rev = "dirac"
-repo-url = "https://github.com/GianlucaFuwa/MetaQCD.jl"
-uuid = "31f46e0f-f1ce-4e94-be20-2bb7f09e036f"
-version = "1.0.0"
-
-    [deps.MetaQCD.extensions]
-    MetaAMDGPUExt = "AMDGPU"
-    MetaCUDAExt = "CUDA"
-
-    [deps.MetaQCD.weakdeps]
-    AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e"
-    CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
-
-[[deps.MicrosoftMPI_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01"
-uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf"
-version = "10.1.4+2"
-
 [[deps.Missings]]
 deps = ["DataAPI"]
 git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
@@ -1022,11 +881,6 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 version = "2022.10.11"
 
-[[deps.MuladdMacro]]
-git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab"
-uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
-version = "0.2.4"
-
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
 git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c"
@@ -1056,9 +910,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.OffsetArrays]]
-git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e"
+git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-version = "1.14.0"
+version = "1.14.1"
 weakdeps = ["Adapt"]
 
     [deps.OffsetArrays.extensions]
@@ -1080,12 +934,6 @@ deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+0"
 
-[[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "a9de2f1fc98b92f8856c640bf4aec1ac9b2a0d86"
-uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.3+0"
-
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
 git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4"
@@ -1172,12 +1020,6 @@ deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 version = "1.9.2"
 
-[[deps.PkgVersion]]
-deps = ["Pkg"]
-git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da"
-uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688"
-version = "0.3.3"
-
 [[deps.PlotThemes]]
 deps = ["PlotUtils", "Statistics"]
 git-tree-sha1 = "6e55c6841ce3411ccb3457ee52fc48cb698d6fb0"
@@ -1518,12 +1360,6 @@ git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27"
 uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5"
 version = "0.5.2"
 
-[[deps.TimerOutputs]]
-deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531"
-uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.24"
-
 [[deps.TotalLeastSquares]]
 deps = ["FillArrays", "LinearAlgebra", "Printf", "SparseArrays", "Statistics", "StatsBase"]
 git-tree-sha1 = "6a64caee260f2c712635a832298cf25430f582fc"
@@ -1600,17 +1436,6 @@ git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8"
 uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728"
 version = "1.6.4"
 
-[[deps.UnsafeAtomics]]
-git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278"
-uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f"
-version = "0.2.1"
-
-[[deps.UnsafeAtomicsLLVM]]
-deps = ["LLVM", "UnsafeAtomics"]
-git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5"
-uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249"
-version = "0.1.5"
-
 [[deps.Unzip]]
 git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
 uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"

MetaAnalysis/Project.toml

@@ -10,9 +10,10 @@ DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
 LsqFit = "2fda8390-95c7-5789-9bda-21331edee243"
-MetaQCD = "31f46e0f-f1ce-4e94-be20-2bb7f09e036f"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"

MetaAnalysis/src/MetaAnalysis.jl

@@ -3,11 +3,10 @@ module MetaAnalysis
 using ADerrors
 using DelimitedFiles
 using Dierckx
+using LoopVectorization
 using LsqFit
-using MetaQCD
-using MetaQCD.Fields.Polyester
-using MetaQCD.Utils.LoopVectorization
 using Plots
+using Polyester
 using Printf
 using ProgressMeter
 using RecipesBase
@@ -19,6 +18,7 @@ export Bootstrap, Jackknife, UWerr, analyze, modify_bias
 
 abstract type AbstractErrorEstimator end
 
+include("bias.jl")
 include("viz.jl")
 include("autocorr.jl")
 include("bootstrap.jl")