Evidence of widespread independent sequence signature for transcription factor co-binding

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Installation

Git clone a copy of code:

git clone https://github.com/GuanLab/Sequence_Analysis_for_TF-co-binding.git

Required dependencies

• python (3.6.5)
• numpy (1.13.3). It comes pre-packaged in Anaconda.
• R(3.6.1)
• perl (5.10.1)
• xgboost

Dataset

• Genomic coordinates
• DNase-seq
• DNA sequence and motif
• Gencode