-
Notifications
You must be signed in to change notification settings - Fork 4
Installing FSL
Register here: https://fsl.fmrib.ox.ac.uk/fsldownloads_registration/
- this will get you the
fslinstaller.pyfor your Operating System (OS)
Follow instructions here, for example for MacOSX
- https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/MacOsX
- video: https://www.youtube.com/watch?v=QNp3lyP57rw
If you get errors in usage:
In June 2020, MV ran into this issue: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind2004&L=FSL&D=0&P=73952
And these are commands used to fix it:
Open fslpython_install.sh with this command in the terminal (sudo is giving you super permissions to edit really important files, so use sparingly):
sudo pico /usr/local/fsl/etc/fslconf/fslpython_install.sh
In pico or nano, use your cursor to move down to line 149 (in pico press ctrl +C to see the line numbers)
Line 149 currently reads: dl_cmd_opts="--fail"
Change it to: dl_cmd_opts="--fail -L"
In pico/nano press Ctrl + O to write out and save your changes, and then exit pico.
In the terminal then paste the following at the command prompt to re-install fslpython:
sudo /usr/local/fsl/etc/fslconf/fslpython_install.sh -f /usr/local/fsl
type bash at the terminal to reinstate fsl, and then type imglob to see if you now see imglob usage