Detecting recombination breakpoints using Linked read sequencing
These are the source codes supporting the analysis in Sun and Rowan et al., 2019.
Please refer to INSTALL for compiling. The current compilations have been successfully tested on Linux (arch: x_86_64, with g++ version Debian 6.3.0-18+deb9u1 and R version 3.5.1).
Please start with DrLink_pipeline.sh (step by step) to perform recombinant molecule prediction with 10X linked-reads.