take config filename as absolute path

HelikarLab · Apr 29, 2024 · 8f8cdc1 · 8f8cdc1
1 parent 4e30a46
commit 8f8cdc1
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/main/como/rnaseq_gen.py b/main/como/rnaseq_gen.py
@@ -97,9 +97,7 @@ def handle_context_batch(
     """
 
     config = Config()
-    rnaseq_config_filepath = os.path.join(
-        config.data_dir, "config_sheets", config_filename
-    )
+    rnaseq_config_filepath = config_filename 
     xl = pd.ExcelFile(rnaseq_config_filepath)
     sheet_names = xl.sheet_names